Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01639 ATGGCAACAACAGAGGCAGCTTCTGCTGATCCCGGTCCTAGATATGCACCGGTTGATCACTCGCTTCCGGCACCGTGGAAAGGTTTGATTGATGGAGCTACTGGTTTGTTATACTATTGGAATCCTGATACCAATGTTACTCAGTATGAAAAGCCGACACCGTTGGCTCCACCTGTGGTTTCGGTTTCTACGCCGAGCTTGGCGCCTATACCTGTGGCTCAACAGCATGGGCAAGGGCAACAGATGATGCAACAACAGCAGGGGGGTCACTTTGCCCAACAGCATGCCCAACAGATGCCGCAGCAGATGAGTCCTCATGTGGCGCAAGGTACTCAGCAGCCGAATTCTCAGGCTGCTCAACCTGTGCAGCAGAACTCGCAGATTTCACAGCCGGCACAACAGCCAGGGTTACACCAAAGTAGACCACAGATGATGCAGCCTCAGGGGCAGCAGATGATGCAGTATCAAGGACAGCAATTTCAGCAAATGCATCATCAGATGCCTCCGCAGGCGATTCGTCCACAACAATTTGGGCAAGGAGGGACTCAAGACCACGGTTCGCATCTTGTGCAACCGCAAGCGCCACAGTTTACTCCTCAGAACATGCAGTATATGGGATATCAACAAAACATGGTTACACCTAGGCAACCTAACTCTCAGCAGATTCAACCAAATATGCACCCATCTGGGCAACCAAACCCCCAGCAGAATCAGCTTCCGCATAACATACATAGCCAGCCTTTTGAAAATCAGCAAGATTTTAAAACAGCGATGCCAAAGATGGAGGAAGCAGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCACCGTCACAGTATCAACAACGGAGTGCCTTGCCTGTTCAGAACAATAAAAATGTTCCTGCTGAAGTTAGTTCTGGTCAAGTTCCTAATGCAAGTGTTAATCCTGGTCAACCACAACAATTTAGGGGCTATCCAGGAAGCATGCAACAGCCTAGCCCGACAATGCAGTCACAGCAAGGTGGTTCTGATTTATATTACCAACATGGTCCTAACTTTCAAAACCAGATGAGCCCGCCGGGAATGATGCATGGTCATCCATCCAGTGTGCATCCTGTTGCCCAAAAGATGGGACACGAGGACAATGTACATGGTAGAGCTGGAAATGACTATTACTATAATTCTAACAAAGAGATGCCGCCAATGGGTCGTCAGCAGCCAGATATGACTCAAATGCCGATTTCCAGAAATCAGCTGGATATGAGGATCGGCAATTCCCCTTTTCAAAATAATGTCCCCATTGGAAATGGAAGTGGTATTACTGTGAATCCTATGAGTAACATGTTCACTCCTCCAATAGGAGGACCTTCTCCTCTTTCAAGCAACTCTTTTACGAGGCCTCCTTATGGTGGATCTTCAGATGTTACTGATCTCTCGGCAGCTGAATTATACTGTCAGCAACATGAAGTTACAGCCACGGGTGACAACATTCCACCCCCATTCATGACATTTGATTCTACCGGGTTCCCTCCAGAGATATTGCAAGAGGTACGTTCTGCGGGCTTCTCGAATCCAACTCCAATACAGGCTCAAACATGGCCCATTGCCCTACAGGGTAGAGACATAGTGGCTATTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTAATGCCGGCCTTCATTCTTCTCAGGCAGAGACGCAATAATTCTCTGAATGGCCCCACTGTTTTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGGCCTTCAGCTAAAGGAGTTAGATCGTGGGGCAGACATTGTTGTTGCCACACCTGGTAGGCTTAATGATATacttgaaatgaaaaaaattgactttagGCAAGTTTCACTCCTTGTGCTTGATGAGGCCGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCACGTAGACAAACTCTCATGTACACTGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCCAGCGATCTTCTTGTTAATCCTGTTCAGGTTAACATTGGAAATGTAGACGAGCTTGCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTCTAGAGCAGATCCTCAGATCCCAGGAACGGGGTTCTAAGATCATAATATTTTGTTCCACAAAAAAGTTATGTGATCAGCTTGCCAAAAGTATTGGCCGAACTTTTGGGGCTGCTGCAATTCACGGTGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAGTTCCGGACAGGGAAATCTCCAATTTTGGTTGCCACCGATGTTGCTGCTCGTGGTCTTGATATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCCAATGGTGTTGAGGACTATGTACACCGAATTGGAAGAACTGGGAGGGCAGGTGCTACCGGAATGGCATATACCTTTTTCTCCGAGCAGGATTGGAAACATGCAGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAGCAAGTGCTTCCAGAGTTAAGACAGATTGCTTCACGTGGGCCACCAAGCTTTGGAAAGGATAGGGGCGGGATGAGTCGGTTTGACTCTGGTGGTGGCGGTGGTGGGCGCTGGGAGAGTGGTGGTCGTGGAAATATGAGGGACAGTGGATTTGGTGGTCGTGGGGGCATGAGGGATGGTGGTGGCTTTGGTGGTCGTGGGGGAATGAGGGATGGTGGTGGCTTTGGGGGTCGCGGTGGCGGTGGAATGAGGGATGGAGCTGGCGGACAAGGTGGTAGAGGTGATTTCTTTCCTGGTAGGGGGGGCAACAGGGGTAGAGGATTTGGTGGTAGTGCTCCACGTGGGGGCAGTGTTGGCTGGGGTAGGGGTGACCGTGGTGGTCCTAGTGATCGGTACATGGATGGCCGTGGACAAGGACGTGGACGGGGACGATTTGACAACAGAAGAGATCTTCCGAGAAGTAGAGACAGAAGTTACAGTCGTAGCCCTGATAGAGTTCGAACATGGGATATTAACAGAAGCAGCAGCAGGAGTAGAAGTAGAAGTAGGAGTAGGAGCTATAGCCGTAGTCGTAGTCCACGTCGCAGCTGGTCTCGAGGTCGAAGTCGCAGCTATAGCCGCAGTCGTAGTCCACGTCGGAGTCGTAGCCGTGGTCGTAGTTATAGCCGCAGCCGCAGCCCCAAACCTACAAGGCGTGTTAAGTCAAAATTTTCTGATAAGATCGATACTGTGGCACCTGAAGCAGGAGCTTCTGATCCTAAAATGTTCCCTATACCTGGCAACACCCAAGGGAATTCTGTTTCGGGAACAGATCATGTGGAGCAACTACCTGTTGTTGGGAGCACTGGCCCAAATAATCCAGAGGCTATAGCCGACACTAGTCATCAACCAGCTTCTGATATTTGA 3492 0.4854 MATTEAASADPGPRYAPVDHSLPAPWKGLIDGATGLLYYWNPDTNVTQYEKPTPLAPPVVSVSTPSLAPIPVAQQHGQGQQMMQQQQGGHFAQQHAQQMPQQMSPHVAQGTQQPNSQAAQPVQQNSQISQPAQQPGLHQSRPQMMQPQGQQMMQYQGQQFQQMHHQMPPQAIRPQQFGQGGTQDHGSHLVQPQAPQFTPQNMQYMGYQQNMVTPRQPNSQQIQPNMHPSGQPNPQQNQLPHNIHSQPFENQQDFKTAMPKMEEAEFKNGSQVGFSPSQYQQRSALPVQNNKNVPAEVSSGQVPNASVNPGQPQQFRGYPGSMQQPSPTMQSQQGGSDLYYQHGPNFQNQMSPPGMMHGHPSSVHPVAQKMGHEDNVHGRAGNDYYYNSNKEMPPMGRQQPDMTQMPISRNQLDMRIGNSPFQNNVPIGNGSGITVNPMSNMFTPPIGGPSPLSSNSFTRPPYGGSSDVTDLSAAELYCQQHEVTATGDNIPPPFMTFDSTGFPPEILQEVRSAGFSNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKGLQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELAANKSITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLAKSIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGMAYTFFSEQDWKHAGDLIKVLEGANQQVLPELRQIASRGPPSFGKDRGGMSRFDSGGGGGGRWESGGRGNMRDSGFGGRGGMRDGGGFGGRGGMRDGGGFGGRGGGGMRDGAGGQGGRGDFFPGRGGNRGRGFGGSAPRGGSVGWGRGDRGGPSDRYMDGRGQGRGRGRFDNRRDLPRSRDRSYSRSPDRVRTWDINRSSSRSRSRSRSRSYSRSRSPRRSWSRGRSRSYSRSRSPRRSRSRGRSYSRSRSPKPTRRVKSKFSDKIDTVAPEAGASDPKMFPIPGNTQGNSVSGTDHVEQLPVVGSTGPNNPEAIADTSHQPASDI 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01639 1163 Gene3D - 470 704 IPR027417 -
Tsu07g01639 1163 Gene3D - 17 61 - -
Tsu07g01639 1163 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 495 523 IPR014014 GO:0003724
Tsu07g01639 1163 MobiDBLite consensus disorder prediction 172 193 - -
Tsu07g01639 1163 SUPERFAMILY WW domain 15 54 IPR036020 GO:0005515
Tsu07g01639 1163 SMART ultradead3 514 717 IPR014001 -
Tsu07g01639 1163 MobiDBLite consensus disorder prediction 873 1163 - -
Tsu07g01639 1163 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 729 873 IPR001650 -
Tsu07g01639 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 566 849 IPR027417 -
Tsu07g01639 1163 MobiDBLite consensus disorder prediction 989 1039 - -
Tsu07g01639 1163 CDD WW 23 54 IPR001202 GO:0005515
Tsu07g01639 1163 Gene3D - 705 875 IPR027417 -
Tsu07g01639 1163 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 287 958 - -
Tsu07g01639 1163 SMART ww_5 21 54 IPR001202 GO:0005515
Tsu07g01639 1163 MobiDBLite consensus disorder prediction 1 22 - -
Tsu07g01639 1163 MobiDBLite consensus disorder prediction 1141 1163 - -
Tsu07g01639 1163 Pfam DEAD/DEAH box helicase 519 689 IPR011545 GO:0003676|GO:0005524
Tsu07g01639 1163 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 287 958 - -
Tsu07g01639 1163 MobiDBLite consensus disorder prediction 73 152 - -
Tsu07g01639 1163 Pfam Helicase conserved C-terminal domain 726 834 IPR001650 -
Tsu07g01639 1163 Pfam WW domain 22 52 IPR001202 GO:0005515
Tsu07g01639 1163 SMART helicmild6 754 834 IPR001650 -
Tsu07g01639 1163 CDD SF2_C_DEAD 714 843 - -
Tsu07g01639 1163 MobiDBLite consensus disorder prediction 213 245 - -
Tsu07g01639 1163 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Tsu07g01639 1163 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Tsu07g01639 1163 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 526 700 IPR014001 -
Tsu07g01639 1163 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 646 654 IPR000629 -
Tsu07g01639 1163 MobiDBLite consensus disorder prediction 1120 1134 - -
Tsu07g01639 1163 MobiDBLite consensus disorder prediction 1040 1093 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01639 Tsu-Chr7 15365737 15373900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01639 483 854 Eukaryotic Initiation Factors Gene Family AT3G19760 34.584 1.73e-65 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01639 K12823 - gmx:100807830 1319.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01639 07 15365737 15373900 Tsu07g01639 07 15365737 15373900 ECH