Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01611 ATGGGTGCTCCGAAGCAGAAATGGTCGGCAGAAGAGGAAGCGGCGCTTAAGGCTGGAGTTGTCAAGCATGGGGTGGGTAAATGGCGCACAATACTCAAGGATCCTGAGTTTAATTGTGTCTTATATATTCGCTCAAATGTTGATCTAAAGGATAAATGGAGAAATTTGAGTGTGATGGCAAATGGATGGACTTCTAGGGAGAAGGCTAAGGTATCAATCAGAAGGGTGCATCATCAGGGATCAAGACATGATGACAACTCTATGGCTGTCACTCCTGTTACTCCAAGTGATGATGAAATTGTTGATGTTAAGCCTCTTCAAGTTTCAAGAGATATGATGCAAATTCCTGGTCCAAAAGGGTCTATTGTAAGATTGGATAACCTTATCATGGACGCTATATCTTGCTTGAATGAGCATGGTGGTTCTAATAAAACAACTATTGCTGCTTTCATAGAGGATCAATACTATGCACCGGAAGACTTCAAAAAGATGTTGTCTGCAAAACTGAAGTACCTTACGTCTAGGGGAAAACTGATCAAGGTGAAACGCAGGTATAGGATTGCTCCTACCCCAGCATATTCAGACAGAGGAAGACGCTCTCCCATGTTATTACTGGAAGGGAGGCAGAGAGGCTCTTTTAGATTTGACATGAGTCGGGTCAATATGCCTACACAGTCTGAGATAGATATAGAGTTAGAAAAGATAAGGTCCATGTCTGCAGAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCTGCAGCGGAAGCCGCCTTAGCGGAAGCTGAAGAGGCAGTACTGGAGGCAGAGGCTGCAGAAGCAGAAGCAGATGCAGCGGAAGCTTTTGCAGAAGCTGCAAGGAAAACAGAGAGGGAGACAAAAGCCCCAAAGACGGTGCCCCCTGTTTGA 906 0.4547 MGAPKQKWSAEEEAALKAGVVKHGVGKWRTILKDPEFNCVLYIRSNVDLKDKWRNLSVMANGWTSREKAKVSIRRVHHQGSRHDDNSMAVTPVTPSDDEIVDVKPLQVSRDMMQIPGPKGSIVRLDNLIMDAISCLNEHGGSNKTTIAAFIEDQYYAPEDFKKMLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRRSPMLLLEGRQRGSFRFDMSRVNMPTQSEIDIELEKIRSMSAEEAAAVAARAVAAAEAALAEAEEAVLEAEAAEAEADAAEAFAEAARKTERETKAPKTVPPV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01611 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Tsu07g01611 301 Coils Coil 244 290 - -
Tsu07g01611 301 SUPERFAMILY "Winged helix" DNA-binding domain 120 198 IPR036390 -
Tsu07g01611 301 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Tsu07g01611 301 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Tsu07g01611 301 MobiDBLite consensus disorder prediction 281 301 - -
Tsu07g01611 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu07g01611 301 PANTHER SINGLE MYB HISTONE 4 1 296 IPR044597 GO:0003691
Tsu07g01611 301 SMART sant 4 59 IPR001005 -
Tsu07g01611 301 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu07g01611 301 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Tsu07g01611 301 Gene3D - 2 59 - -
Tsu07g01611 301 Pfam linker histone H1 and H5 family 126 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu07g01611 301 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 296 - -
Tsu07g01611 301 Gene3D - 121 196 IPR036388 -
Tsu07g01611 301 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01611 Tsu-Chr7 14964296 14970072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01611 1 241 Single Myb Histone (SMH) Gene Family AT1G49950 56.098 1.90e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu07g01611 Linker_histone 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01611 K09422 - gmx:778173 352.443