LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu07g01600	ATGGAAGAAGAGAATAATGAAATTAAATCATTTAAGGATTTGGGTTTATCTGAGCAATTGGTGGATGCTTGTGAAAAATTCGGTTGGAAGAATCCGCTAAAGATTCAAACAGAAGTGATCCCCCTTGCGCTACAAGGAAAAGATGTGATTGGACTTTCCCAAACGGGTTCTGGTAAGACTGGGGCCTTTGTTCTTCCTATATTGCACGCCTTCTTAGAAGCACCACAACCACACCTAAACAATTTCTTTGCTTGTATAATGTCTCCAACAAGGGAGCTTGCCATTCAAATTGCTGACCAGATTAAAGATCTAGGTTCTGAAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGACTGACATTGTACAACAAGCCATCGAGATAGCAAAGCGGCCTCATATTATTGTTGGGACCCCTGGACGAGTCTTGGATCACCTAAAACAAACCAAAGGATTTTCTCTTGGTAGATTAAAATTCTTTGTCTTAGATGAGGCAGACAGGCTGTTGAATGAAGAATTTGAAACACAACTTAATGAGATTTTAGAATTTATTCCTAGTAAGCGGAGAACATTTCTTTTTTCAGCTACGATGACAAAGAAGGTCCGTAAGATCCAAAGGATGTGCTTAAGGGATCCTGCGAAGGTTGAAGTATCATCCaaatattctactgtggacacacTGAAGGAGCAGTGTTGCTTTGTGCCAGCAAAACATAAGAATTGCTACCTCGTATACATTCTCATTGAAATGACTGGGTGTACGTCAATGGTATTCACTCGGACTTGTGATTCATCGCGGCTTCTGGCTTCAATTCTTACGAAACTAGGTTTGAAAGCCATCGCAATCAATGGTAATATGAGTCAGTCAAAGAGAGTCGAAGCCTTGGAACAGTTCAAGTCTGGGGAGTGCAAAATTCTCCTTTGTACCGACGTACTTAGTAGAGGACTGGATATTCCGGAGGTAGATGTGGTGATTAACTACGACATTCCCACGGATCCCAAACTTTATATACATCGTGTCGGAAGGACTGCTCGTGCTGGGCGCTCTGGTGTTGCCATTTCTCTTTTGAACCAGTATGAAGTGGGGTGGTTCAAAAAGATAGAAGAACTCATGGgAGGCAAGAAGCTACCATTGTATCCTGCACAAGAGGAGGAAGTTTTGCTTTTGAAAGAGCGCGTTAGTGAGGCCAAAAGATCAGCAGAAAAGGAAATTAAAGAATCctatgagaagaagaaaaggagaGGAGAAGGAGATTTAAGTGAGGATGAGGAGGATACTGACAAGTACTTAGGTCTCTTGTCAAAAAATAAGtcagcaaaaagaaaaaagacaatGGGCAGCACTGGTAAGATTACTAAGATAGATAACAAAAGGAGATTTAAGtaa	1386	0.3961	MEEENNEIKSFKDLGLSEQLVDACEKFGWKNPLKIQTEVIPLALQGKDVIGLSQTGSGKTGAFVLPILHAFLEAPQPHLNNFFACIMSPTRELAIQIADQIKDLGSEIGVKCAVLVGGTDIVQQAIEIAKRPHIIVGTPGRVLDHLKQTKGFSLGRLKFFVLDEADRLLNEEFETQLNEILEFIPSKRRTFLFSATMTKKVRKIQRMCLRDPAKVEVSSKYSTVDTLKEQCCFVPAKHKNCYLVYILIEMTGCTSMVFTRTCDSSRLLASILTKLGLKAIAINGNMSQSKRVEALEQFKSGECKILLCTDVLSRGLDIPEVDVVINYDIPTDPKLYIHRVGRTARAGRSGVAISLLNQYEVGWFKKIEELMGGKKLPLYPAQEEEVLLLKERVSEAKRSAEKEIKESYEKKKRRGEGDLSEDEEDTDKYLGLLSKNKSAKRKKTMGSTGKITKIDNKRRFK	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu07g01600	461	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	81	368	IPR027417	-
	Tsu07g01600	461	MobiDBLite	consensus disorder prediction	398	461	-	-
	Tsu07g01600	461	PANTHER	RNA HELICASE	2	430	-	-
	Tsu07g01600	461	MobiDBLite	consensus disorder prediction	398	419	-	-
	Tsu07g01600	461	Gene3D	-	222	459	IPR027417	-
	Tsu07g01600	461	Gene3D	-	1	221	IPR027417	-
	Tsu07g01600	461	Coils	Coil	390	410	-	-
	Tsu07g01600	461	Pfam	DEAD/DEAH box helicase	34	204	IPR011545	GO:0003676\|GO:0005524
	Tsu07g01600	461	Pfam	Helicase conserved C-terminal domain	242	347	IPR001650	-
	Tsu07g01600	461	SMART	ultradead3	28	230	IPR014001	-
	Tsu07g01600	461	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	40	215	IPR014001	-
	Tsu07g01600	461	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	9	37	IPR014014	GO:0003724
	Tsu07g01600	461	PANTHER	BNAC02G41920D PROTEIN	2	430	-	-
	Tsu07g01600	461	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	161	169	IPR000629	-
	Tsu07g01600	461	CDD	DEADc_DDX47	10	216	IPR044765	GO:0005524
	Tsu07g01600	461	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	242	387	IPR001650	-
	Tsu07g01600	461	CDD	SF2_C_DEAD	227	356	-	-
	Tsu07g01600	461	SMART	helicmild6	266	347	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu07g01600	Tsu-Chr7	14817227	14824381	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu07g01600	9	358	Eukaryotic Initiation Factors Gene Family	AT3G13920	34.188	4.83e-61	203

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu07g01600	K14777		-	gmx:100775796	651.744