Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01563 AtgatggaagaagaagagaatatTCATGAAGGatataaaggaaaaaatgttgaaatgaGTAGTATGAGTTGTTTAGAGTTAGAGACATCATCATCTCAAAATTCaaggaagaaaaataagaaGGTAGAAAATAAGAGAAGGTTTAGTGATGAACAAATAAGATCACTAGAATGTATATTTGAGTCAGAATCAAAGTTAGAACCAAGGAAGAAGATTCAACTTGCTAGAGATCTTGGTTTGCAACCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGAGCTAGGTGGAAATCAAAAAGGATTGAACAAGAATATAGAAAACTCAAAGATGAATATGATAATTTAGCTTCTAAGTTTCAGTCACTTAAAGAAGAGAAAGAGTCTTTGCAATCAGAGgTTCAGAAGTTAAGTTATATGGTGGAAACATCTCATGATTGTGGTGGAAGGGAAGCTAAGGAACATAGCACAGAAGATGGTGGTTCAGGAAATGGATATAGCAATTGCAGGGTTGAAACAAAGCAAAGGTTTACAAATGTGGGTTTAGAGGATAGAATGGTAATTTACTCAGATGATCAAAATGAAAGAAGTATAACAAGGACTGAAGACAGAGGAAATCAAGTTTTGAGAAATGATGATCATGATCAAATTCCATTGACAACACTTGAAAAATGGTACAATGTTGATCCAAGTAGTATATTAGACCAATCATGTAACAGTTCTCAATGGTTGGATTTTTGGACTTGA 744 0.3105 MMEEEENIHEGYKGKNVEMSSMSCLELETSSSQNSRKKNKKVENKRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQSLKEEKESLQSEVQKLSYMVETSHDCGGREAKEHSTEDGGSGNGYSNCRVETKQRFTNVGLEDRMVIYSDDQNERSITRTEDRGNQVLRNDDHDQIPLTTLEKWYNVDPSSILDQSCNSSQWLDFWT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01563 247 MobiDBLite consensus disorder prediction 23 48 - -
Tsu07g01563 247 MobiDBLite consensus disorder prediction 33 48 - -
Tsu07g01563 247 MobiDBLite consensus disorder prediction 148 167 - -
Tsu07g01563 247 ProSitePatterns 'Homeobox' domain signature. 74 97 IPR017970 GO:0000981|GO:0006355
Tsu07g01563 247 SUPERFAMILY Homeodomain-like 27 99 IPR009057 -
Tsu07g01563 247 SMART HOX_1 42 103 IPR001356 GO:0003677
Tsu07g01563 247 Pfam Homeodomain 45 97 IPR001356 GO:0003677
Tsu07g01563 247 PRINTS Lambda-repressor HTH signature 79 95 IPR000047 GO:0003677
Tsu07g01563 247 PRINTS Lambda-repressor HTH signature 70 79 IPR000047 GO:0003677
Tsu07g01563 247 Pfam Homeobox associated leucine zipper 99 139 IPR003106 GO:0006355|GO:0043565
Tsu07g01563 247 ProSiteProfiles 'Homeobox' domain profile. 39 99 IPR001356 GO:0003677
Tsu07g01563 247 CDD homeodomain 45 100 IPR001356 GO:0003677
Tsu07g01563 247 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 247 - -
Tsu07g01563 247 Gene3D - 8 100 - -
Tsu07g01563 247 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 247 IPR045224 GO:0003700
Tsu07g01563 247 Coils Coil 91 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01563 Tsu-Chr7 14283817 14285644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01563 36 247 Homeobox Transcription Factor Family AT2G46680 42.489 3.04e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu07g01563 Homeodomain 2.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01563 K09338 - gmx:100499926 326.25