Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01549 ATGTCACATACTAGGCAAAACAAGATGATGAGTCCAAACGTTGTTCCTAAACATGTTGGTGACACAACTTATACTAAGATTTTTGTTGGTGGATTGGCTTGGGAGACTAAAAGAGACACACTCAAACGTTATTTTGATCAGTTTGGTGATATCTTAGAAGCTGTTGTTATCACTGATAGAACCACTGGAAAATCAAAAGGATATGGCTTTgTTACCTTCAAGGATCCAAATTCTGCAATACTTGCTTGCCAAAATCCTAATCCTGTGATTGATGGAAGAAGAGCTAATTGTAATCTTGCTTCTCAACAATCTGATTCAGGAAAGCAGAAAATCAATAGTCCTTCATGGACTAATGCACCAATCCAATTTCAAGGTTCATCCATATATTACAATTACAATCAACATGTACCTCAATATGCATTTCCTTTACCGGTTTACAGGTACCCTCACCCTGGTTATCTTCGTCCACAAGACATTTATGAAATGAGCTATAATAATGCATATGGTGGACCACAATTTCCATTTCGTTGGATTCCAGCATATTACCAACCCTATTATGGCCTTAGTAGACAATTAATTCCAACAACTTATGTGAAAAAGACACAATTCCATGATGTTGTTGGCATATCAGGACCTATTTCACCTTCTACTTCAATTTCTAGCACTGGAGCTGCAACAAGAGTGGTAGAATCACCCAAAGATCAAAAATCTTCAGCTTAA 720 0.3694 MSHTRQNKMMSPNVVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQNPNPVIDGRRANCNLASQQSDSGKQKINSPSWTNAPIQFQGSSIYYNYNQHVPQYAFPLPVYRYPHPGYLRPQDIYEMSYNNAYGGPQFPFRWIPAYYQPYYGLSRQLIPTTYVKKTQFHDVVGISGPISPSTSISSTGAATRVVESPKDQKSSA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01549 239 MobiDBLite consensus disorder prediction 216 239 - -
Tsu07g01549 239 PANTHER BOULE-RELATED 1 234 IPR037366 GO:0003729
Tsu07g01549 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 85 IPR000504 GO:0003723
Tsu07g01549 239 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 234 - -
Tsu07g01549 239 CDD RRM_RBM24_RBM38_like 25 100 - -
Tsu07g01549 239 SMART rrm1_1 26 98 IPR000504 GO:0003723
Tsu07g01549 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Tsu07g01549 239 SUPERFAMILY RNA-binding domain, RBD 2 111 IPR035979 GO:0003676
Tsu07g01549 239 Gene3D - 1 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01549 Tsu-Chr7 14097413 14099407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01549 21 110 C2H2 Transcription Factor Family AT2G19380 39.560 5.12e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01549 - - cam:101508568 348.591