Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01548 ATGGCGGTTGCTGATAATGTTGGTGCCAAAATCGGTTCTTCAAGTCAGAATTTGGAGAACAACaataccaacaacaacaacaacgttgTATCATCTGACTCAGCTGAGGTGGAGAAATCGAAACCTAGGACCGATCAGGATGTGAACAACAATGGTGTGTTCAATCATCAACACCAAGAAAGAGTTACCAATGGTAACTATGGCTTCAAGACTCATCAAATGGGTCAGATGCATGGTAACGGGGTTCAGAATCAGCAGTTTGTGGTGAACAATGATGGGTATGTGATGAATGGTGTCAGAAATGGTGAGAATGGTGGCGAGAGTTTTAAGCGCGAAATGAGGGATTTGGAAGAGCTGTTGTCAAAGCTGAATCCTATGGCTGAGGAATTTGTGCCTCCGTCACTAACAAATAATCAGGGCTACTTAGCTGCTGGACCTGCTGCTGGGTTTGGTTACCCTCCTAACAAttttatacttttgaataaTTATGCTAATGCTAACGGCCAAACTAACCGAAGGAGGAAGAATGGCTATACTACTAACGGGAAGCGAAGAGTGAATCATAAAGTAGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCTTCTCTCTTTCTTAATTGCGGCCAGGTTGTTGATTGCCGTGTATGCGGAGATCCCAATTCTATTCTCCGATTTGCTTTCATTGAGTTTACTGATGAAGAAAGTGCTAGGGCTGCTGTAAGCCTGTCTGGAACTATGCTGGGATATTACCCACTGAGAGTGCTGCCTTCCAAAACTGCCATTGCACCTGTCAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAACATCGACAAGAAGCTGACTCAAGCAGATGTGAAACACTTCTTTGAATCGATCTGTGGAGAGGTCCAACGACTGAGGCTTCTTGGGGATTACCAGCATTCAACTCGGATTGCATTTGTTGAGTTCACAGTGGCTGAGAGTGCAATTGCAGCTCTGAGCTGCAGTGGAGTGATTTTGGGTGCGCTGCCTATAAGGGTAAGTCCGTCAAAGACACCGGTCCGAGCTCGTTCTCCTCGTAGTCCATGA 1155 0.4364 MAVADNVGAKIGSSSQNLENNNTNNNNNVVSSDSAEVEKSKPRTDQDVNNNGVFNHQHQERVTNGNYGFKTHQMGQMHGNGVQNQQFVVNNDGYVMNGVRNGENGGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNQGYLAAGPAAGFGYPPNNFILLNNYANANGQTNRRRKNGYTTNGKRRVNHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYQHSTRIAFVEFTVAESAIAALSCSGVILGALPIRVSPSKTPVRARSPRSP 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01548 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 276 IPR000504 GO:0003723
Tsu07g01548 384 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 383 - -
Tsu07g01548 384 MobiDBLite consensus disorder prediction 1 52 - -
Tsu07g01548 384 Pfam Ataxin-2 C-terminal region 120 134 IPR009818 -
Tsu07g01548 384 SUPERFAMILY RNA-binding domain, RBD 189 277 IPR035979 GO:0003676
Tsu07g01548 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 266 IPR000504 GO:0003723
Tsu07g01548 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 362 IPR000504 GO:0003723
Tsu07g01548 384 SUPERFAMILY RNA-binding domain, RBD 289 379 IPR035979 GO:0003676
Tsu07g01548 384 CDD RRM1_CID8_like 199 278 IPR034823 -
Tsu07g01548 384 Gene3D - 285 381 IPR012677 -
Tsu07g01548 384 Gene3D - 162 278 IPR012677 -
Tsu07g01548 384 SMART rrm1_1 299 370 IPR000504 GO:0003723
Tsu07g01548 384 SMART rrm1_1 202 272 IPR000504 GO:0003723
Tsu07g01548 384 MobiDBLite consensus disorder prediction 9 35 - -
Tsu07g01548 384 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 383 - -
Tsu07g01548 384 CDD RRM2_CID8_like 294 375 IPR034825 -
Tsu07g01548 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 374 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01548 Tsu-Chr7 14087987 14093340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01548 200 362 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 1.20e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01548 - - gmx:106794116 588.186