Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01547 ATGGCGGTAGCTGAGAATGTTGGAACCAAAATCGATTCTCCGACTGAGAATTTGGACAACACTGTTGTTTCATCGGACTCAACTGAGGTTgagaaatcgaaaccaaaaaCCGATCAGAAtctgaacaacaacaacaacggtGTGAtcaatcatcaacaacaacaacaacaacaacaacaacaacaacaacaagacaGTGTTGTTCCCACCGCTGCTATGACTGTTCCTAATGGTAACCATGGTTTCAAGACTCATCAAATGGGTCAGATGCATGGTAATGGGGTTCAGAATCAGCCTCAGTTTGTGGTGAACAATGATGGGTATGTTGTGATGAATGGAAATGGGGGTGAGAGTTACAAGCGTGAAATGAGGGATTTGGAAGAGTTGTTGTCAAAGCTGAATCCTATGGCTGAGGAATTTGTTCCTCCTTCCCTGGTAACTAATTATCAGGGTTACTTAGCTGCTGGACCTAATGCTGGGTTTGGTTACCCTAACAATTTTATGATTCAGAATAATTTTGGTAATGCTAATGGACAGGTTAATAGAAGGAGGAAGAATGGCTATAATAATGCGAAGCGAAGAGGGACCTATAAGATGGATATGGAGAAAAGGGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTCACTGAAGAGCAGCTGGCGGCTCTCTTTCTTAACTGCGGCCAGGTTGTGGATTGCCGTGTATGTGGGGATCCCAATTCCATTCTCCGGTTTGCATTCGTTGAGTTTACTGATGAAGTTGGTGCTAGGACTGCTTTGAACCTGTCTGGAACCATGCTCGGGTATTATCCATTGAGAGTGCTGCCTTCAAAGACTGCCATTGCACCTGTTAACCCAACATTTTTGCCTAGGTCTGAAGATGAAAGAGAGATGTGCACTAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCTGATGTCAAAAACTTCTTTGAATCTATCTGTGGAGAGGTTCAGCGCCTGAGGATTCTTGGAGATTACCATCATTCAACTCGAATTGCTTTTGTGGAGTTCACAGTGGCTGAAAGTGCAATTGCAGCGCTGAGCTGTAGCGGTGTGGTTTTGGGTTCGCTGCCCATAAGGGTTAGTCCATCCAAGACACCAGTCCGTGCTCGTGCAAACCGTGCTCCCATGCACTGA 1188 0.415 MAVAENVGTKIDSPTENLDNTVVSSDSTEVEKSKPKTDQNLNNNNNGVINHQQQQQQQQQQQQQDSVVPTAAMTVPNGNHGFKTHQMGQMHGNGVQNQPQFVVNNDGYVVMNGNGGESYKREMRDLEELLSKLNPMAEEFVPPSLVTNYQGYLAAGPNAGFGYPNNFMIQNNFGNANGQVNRRRKNGYNNAKRRGTYKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNIDKKLTQADVKNFFESICGEVQRLRILGDYHHSTRIAFVEFTVAESAIAALSCSGVVLGSLPIRVSPSKTPVRARANRAPMH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01547 395 SMART rrm1_1 308 379 IPR000504 GO:0003723
Tsu07g01547 395 SMART rrm1_1 211 281 IPR000504 GO:0003723
Tsu07g01547 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 383 IPR000504 GO:0003723
Tsu07g01547 395 MobiDBLite consensus disorder prediction 10 28 - -
Tsu07g01547 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 285 IPR000504 GO:0003723
Tsu07g01547 395 Pfam Ataxin-2 C-terminal region 130 144 IPR009818 -
Tsu07g01547 395 CDD RRM2_CID8_like 303 384 IPR034825 -
Tsu07g01547 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 275 IPR000504 GO:0003723
Tsu07g01547 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 376 IPR000504 GO:0003723
Tsu07g01547 395 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 395 - -
Tsu07g01547 395 MobiDBLite consensus disorder prediction 1 68 - -
Tsu07g01547 395 Gene3D - 294 391 IPR012677 -
Tsu07g01547 395 Gene3D - 171 287 IPR012677 -
Tsu07g01547 395 SUPERFAMILY RNA-binding domain, RBD 191 287 IPR035979 GO:0003676
Tsu07g01547 395 CDD RRM1_CID8_like 208 287 IPR034823 -
Tsu07g01547 395 MobiDBLite consensus disorder prediction 37 68 - -
Tsu07g01547 395 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 395 - -
Tsu07g01547 395 SUPERFAMILY RNA-binding domain, RBD 298 388 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01547 Tsu-Chr7 14055623 14061061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01547 209 371 Eukaryotic Initiation Factors Gene Family AT1G34140 27.545 3.07e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01547 - - gmx:106794116 567.385