Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu07g01546 | ATGAACCTTGGCGCTCTGATGCCactggttttttgtgtttttggtattacGGAATTTGGTGAgTTTCGCGAAGGTTCAAATTGGTACTCAAGCTGTAATCTTTCTGTGGAAAATATGAGTAGTCGCTTTTCTCGCACGATCTATGTTGGCAACCTGCCCTCTGATATAAGAGAATCAGAAATTGAAGATTTATTCTACAAGTATGGTCGCATCATggaaattgaattgaaggttCCTCCTCGCCCTCCGTGTTATTGTTTTGTTGAGTTTGACAATGCACGAGATGCGGAAGATGCAATTCGGGGACGGGATGGTTACAACTTCGATGGATGTCGATTAAGGGTAAGGAGCTGTTCCAACTTTTTTCTTTTTTTATGGTTAACTACAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAAGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGACGATACTGAGTTTAGAAATCCTTGGGCGAGATCATATATTCGGGTGAGGAAGTATGAGAGCAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCGAAAAGGGCTAGAAGTAGATCTTTGGAGCGATCTGTGTCTAGGTCACGATCTATTTCCAGGTCTAGGTCTAGGTCCAGGTCCAGATCCAGATCCAGATCAGCATCGCCAATCAAGCCTTCCAAGCCAAGATCACGATCACGTTCAGCATCTCCTCCACGATCACCACGCCAGGTTCTGTCTGGTAGTGGTTGA | 858 | 0.4277 | MNLGALMPLVFCVFGITEFGEFREGSNWYSSCNLSVENMSSRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVRSCSNFFLFLWLTTVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYESSRSRSRSRSPSRSRSPKRARSRSLERSVSRSRSISRSRSRSRSRSRSRSASPIKPSKPRSRSRSASPPRSPRQVLSGSG | 285 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu07g01546 | 285 | CDD | RRM1_SF2_plant_like | 46 | 115 | - | - | |
| Tsu07g01546 | 285 | MobiDBLite | consensus disorder prediction | 205 | 285 | - | - | |
| Tsu07g01546 | 285 | CDD | RRM2_SF2_plant_like | 130 | 203 | - | - | |
| Tsu07g01546 | 285 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 47 | 114 | IPR000504 | GO:0003723 | |
| Tsu07g01546 | 285 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 130 | 192 | IPR000504 | GO:0003723 | |
| Tsu07g01546 | 285 | Gene3D | - | 128 | 205 | IPR012677 | - | |
| Tsu07g01546 | 285 | MobiDBLite | consensus disorder prediction | 254 | 285 | - | - | |
| Tsu07g01546 | 285 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR SR34A | 40 | 116 | - | - | |
| Tsu07g01546 | 285 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR SR34A | 130 | 269 | - | - | |
| Tsu07g01546 | 285 | SUPERFAMILY | RNA-binding domain, RBD | 44 | 195 | IPR035979 | GO:0003676 | |
| Tsu07g01546 | 285 | MobiDBLite | consensus disorder prediction | 239 | 253 | - | - | |
| Tsu07g01546 | 285 | MobiDBLite | consensus disorder prediction | 224 | 238 | - | - | |
| Tsu07g01546 | 285 | SMART | rrm1_1 | 129 | 202 | IPR000504 | GO:0003723 | |
| Tsu07g01546 | 285 | SMART | rrm1_1 | 46 | 116 | IPR000504 | GO:0003723 | |
| Tsu07g01546 | 285 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 128 | 206 | IPR000504 | GO:0003723 | |
| Tsu07g01546 | 285 | Gene3D | - | 31 | 120 | IPR012677 | - | |
| Tsu07g01546 | 285 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 45 | 120 | IPR000504 | GO:0003723 | |
| Tsu07g01546 | 285 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 40 | 116 | - | - | |
| Tsu07g01546 | 285 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 130 | 269 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu07g01546 | Tsu-Chr7 | 14042705 | 14048724 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu07g01546 | 40 | 212 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 22.798 | 1.37e-07 | 50.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu07g01546 | K12890 | - | gmx:100786491 | 300.056 |