Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01533 ATGCTTTCTTCAGTGATGTCGTCTCAAGATTCAGTTAGCACAGTATACAAATGCATGTGTAGAGGTGCAGCTGACTATCTCGTTAAGCCGATTCGAATAAATGAACTGAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCACAGTTAACCGTAAACGCTGGCATAAATAGTCCCCAAGATGAAACCGATGCACAGCAGAAAGTTGAAGCCACTGCTGAAAACAACGCTGCTAGTTATCGTTCTAGTGGCGAAGCTGCTTGCATTCAAATAAATAAGGACTTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCAAACATGGAAGCTGAGAGTGGCCTGGTTGATAACATGCAGGAATTTTCTCAGCTGAAATGTGCCGACGCAAAACCAAGTGAAACAAAGACACAAGATGTTGACATTCATTTAGGCCAGGCATTGATCACGCAGGACAGTCGCGCTGGAGGATTATGTGTGGCTAACTGCAACAATGGAGAGACAAACACAAATAATGGAAATGATGGTGAGGATCAAGAGCACTTTAGGATTGCTAGTACCAGTGGTGAGGTTAATGACAATCACTATGTTGAAATTAACTCTACTAAGGAAGCTATTGACTTGATTGGAGCATTTCGTACTCATCCGAATTGCAGTCTCAAAAGTTCATCAATTGATTGCACAGGAAAGTTTGACGATTCTCCACAACTGGATCTTTCTCTGAGAAGCTCTCATCCCAGCAGCTTTGAGAAGGAGATCACTGAAGAGAGACACACCCTTATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCAAGCTTCAGCCACAGTAGTAATTAACTTCACTGATCAGCAAAGAGATCAGAACACAAATAATGAGAACCCTAACTCAGAAAGTTCGATACCGAGTATGCAAAAATGTAATATGTCTCTAGCTACGTCCCAATCAAAAGAATCTGAACTCGCAACTTCGCAATCCCAGCAAGGGCATTCTCTCCCAATTCCAGTAAAAGGTGTGAGGTTCAATGATCTATGTATGACCTATGGTTCGACGCTTCCACCAGGGTTTCGTACCCAGTCAGGTCCACCATCAATGCCAGGTTCGGTTGTGTTTCTCGAACAAAGCTTTCAAGCAGATGCATTTTATCAGTCAAatgttaaagaaaataataattcagAACGGATTTACGAACCTCGTGGTCTGAATGGAAACAGCACTGCAAACCAAACGGTGTACACACAGGAACACAAATCAGAACATACAGAGGATCAAAGACTTATCTCCCCGACCACTGATCAAAGTGTCTCCAGTAGTTTCTGTAATAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGTAATTGTGGAAGTAGCAGTATTGTCGAACAAGACCTCACAAATGGTGGACATGCACATCGATCTATCCTACGAGAAGCAGCTCTAAACAAGTTCCGTTTGAAACGGAAAGAGAGATGTTATGAAAAGAAGGTTCGATACGAGAGCAGGAAGAAACTAGCAGAGCAGCGTCCTCGAGTTAAAGGACAATTTGTTCGCCAAATGAATCCTGATCCTCTTTCTGCAGAAAAAGATTGCTAA 1623 0.419 MLSSVMSSQDSVSTVYKCMCRGAADYLVKPIRINELRNLWQHVWRRQSQLTVNAGINSPQDETDAQQKVEATAENNAASYRSSGEAACIQINKDLIEKGSDAQSSCTKPNMEAESGLVDNMQEFSQLKCADAKPSETKTQDVDIHLGQALITQDSRAGGLCVANCNNGETNTNNGNDGEDQEHFRIASTSGEVNDNHYVEINSTKEAIDLIGAFRTHPNCSLKSSSIDCTGKFDDSPQLDLSLRSSHPSSFEKEITEERHTLMHSNASAFKRYTNRQLQASATVVINFTDQQRDQNTNNENPNSESSIPSMQKCNMSLATSQSKESELATSQSQQGHSLPIPVKGVRFNDLCMTYGSTLPPGFRTQSGPPSMPGSVVFLEQSFQADAFYQSNVKENNNSERIYEPRGLNGNSTANQTVYTQEHKSEHTEDQRLISPTTDQSVSSSFCNNGNASHLNSIGYGSNCGSSSIVEQDLTNGGHAHRSILREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQMNPDPLSAEKDC 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01533 540 MobiDBLite consensus disorder prediction 288 339 - -
Tsu07g01533 540 Pfam CCT motif 486 528 IPR010402 GO:0005515
Tsu07g01533 540 ProSiteProfiles CCT domain profile. 486 528 IPR010402 GO:0005515
Tsu07g01533 540 ProSiteProfiles Response regulatory domain profile. 1 44 IPR001789 GO:0000160
Tsu07g01533 540 MobiDBLite consensus disorder prediction 511 540 - -
Tsu07g01533 540 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 5 518 - -
Tsu07g01533 540 SUPERFAMILY CheY-like 5 57 IPR011006 -
Tsu07g01533 540 MobiDBLite consensus disorder prediction 288 342 - -
Tsu07g01533 540 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 518 IPR045279 GO:0009736
Tsu07g01533 540 Gene3D - 5 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01533 Tsu-Chr7 13908999 13912900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01533 5 529 Response Regulator Gene Family AT5G24470 32.468 4.18e-54 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu07g01533 CCT 7e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01533 K12130 - gmx:100777119 721.85