Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu07g01499 | ATGATTCATGGTTTATGCAAGAATAAAATGGTGGATGAAGCCGTGAATCTCTTCAAAGAAATGCATTTAAAAAGCATGGCTCCTGATATTATAACATACACTACTTTAATATACGGCCTTTGTATTGTGGGGAGAATCTCTGATGTTTGGGATCTTCTTGATGAGATGCATGACAGAGGACAACCTGCTAATGTGGTCACTTACACTTCTATATTAGATGCATTGTTTAAAAACAATCAGGTTGACAAGGCAATTGAATTATTAGCGAAGATCAAAGACCAAGGAATTCAGTtaaatatgtatacatacacTATACTTGTCAACGGGCTATGCAAAAATGGAAGAATTAAGGATGCACTAGAGGTTTATCGGGATCTTTTGATTAAAGGCTACCATCTTGATGTGAGGATGCATACTGTTATGATTGATGGGCTATGTAAAGAGGGCTTGTTTGATGAAGCATTGTCCTTAATGTCAAAAATGGAAGATAACGGTTGCTCCCCTAATGCCGTAACTTACAAAACTCTTATTCTTGCTTTGTTGAAAAACGACAAGAATGAGAAGGCGGTGAAACTTCATCGTGAAATGATTGCTAGAGAATATGGAAGGGTAATTCAAATGAAGAACTTCATTGTTGAAACAATATGTCTCCATACCTACCTAGTGAGGAAAGTTGATTTGCTTGATGGAGTTTCGATTGTTCGATCTGAGAAGGTGAAGGATGAGGTTGTTTTGGATGGAAATGACATTGAACTTGTTTCAAGGTCATGTGCCCTTATTAACCAGAAATGCCATGTTAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATTTATGTCAGTGAGAAGGGATCAGTAGTGACTGAAGAATAG | 873 | 0.3654 | MIHGLCKNKMVDEAVNLFKEMHLKSMAPDIITYTTLIYGLCIVGRISDVWDLLDEMHDRGQPANVVTYTSILDALFKNNQVDKAIELLAKIKDQGIQLNMYTYTILVNGLCKNGRIKDALEVYRDLLIKGYHLDVRMHTVMIDGLCKEGLFDEALSLMSKMEDNGCSPNAVTYKTLILALLKNDKNEKAVKLHREMIAREYGRVIQMKNFIVETICLHTYLVRKVDLLDGVSIVRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGSVVTEE | 290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu07g01499 | 290 | SUPERFAMILY | Ribosomal protein L6 | 217 | 283 | IPR036789 | GO:0003735|GO:0005840|GO:0006412|GO:0019843 | |
| Tsu07g01499 | 290 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 64 | 98 | IPR002885 | - | |
| Tsu07g01499 | 290 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 29 | 63 | IPR002885 | - | |
| Tsu07g01499 | 290 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1 | 28 | IPR002885 | - | |
| Tsu07g01499 | 290 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 169 | 203 | IPR002885 | - | |
| Tsu07g01499 | 290 | Pfam | PPR repeat family | 138 | 180 | IPR002885 | - | |
| Tsu07g01499 | 290 | Pfam | PPR repeat family | 64 | 112 | IPR002885 | - | |
| Tsu07g01499 | 290 | Pfam | PPR repeat family | 1 | 41 | IPR002885 | - | |
| Tsu07g01499 | 290 | PANTHER | OS10G0495100 PROTEIN | 1 | 202 | - | - | |
| Tsu07g01499 | 290 | Gene3D | Tetratricopeptide repeat domain | 59 | 129 | IPR011990 | GO:0005515 | |
| Tsu07g01499 | 290 | Gene3D | Tetratricopeptide repeat domain | 1 | 58 | IPR011990 | GO:0005515 | |
| Tsu07g01499 | 290 | SUPERFAMILY | TPR-like | 29 | 127 | IPR011990 | GO:0005515 | |
| Tsu07g01499 | 290 | TIGRFAM | PPR: pentatricopeptide repeat domain | 66 | 99 | IPR002885 | - | |
| Tsu07g01499 | 290 | TIGRFAM | PPR: pentatricopeptide repeat domain | 137 | 170 | IPR002885 | - | |
| Tsu07g01499 | 290 | TIGRFAM | PPR: pentatricopeptide repeat domain | 101 | 134 | IPR002885 | - | |
| Tsu07g01499 | 290 | TIGRFAM | PPR: pentatricopeptide repeat domain | 1 | 29 | IPR002885 | - | |
| Tsu07g01499 | 290 | TIGRFAM | PPR: pentatricopeptide repeat domain | 31 | 61 | IPR002885 | - | |
| Tsu07g01499 | 290 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 134 | 168 | IPR002885 | - | |
| Tsu07g01499 | 290 | Gene3D | - | 188 | 290 | IPR036789 | GO:0003735|GO:0005840|GO:0006412|GO:0019843 | |
| Tsu07g01499 | 290 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 1 | 202 | - | - | |
| Tsu07g01499 | 290 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 99 | 133 | IPR002885 | - | |
| Tsu07g01499 | 290 | Pfam | Ribosomal protein L6 | 223 | 277 | IPR020040 | GO:0003735|GO:0005840|GO:0006412|GO:0019843 | |
| Tsu07g01499 | 290 | ProSitePatterns | Ribosomal protein L6 signature 2. | 262 | 283 | IPR002359 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu07g01499 | Tsu-Chr7 | 13579781 | 13582560 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu07g01499 | 202 | 290 | Cytoplasmic Ribosomal Protein Gene Family | AT1G33140 | 73.034 | 6.18e-37 | 128 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu07g01499 | - | - | cam:101506267 | 297.36 |