Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01499 ATGATTCATGGTTTATGCAAGAATAAAATGGTGGATGAAGCCGTGAATCTCTTCAAAGAAATGCATTTAAAAAGCATGGCTCCTGATATTATAACATACACTACTTTAATATACGGCCTTTGTATTGTGGGGAGAATCTCTGATGTTTGGGATCTTCTTGATGAGATGCATGACAGAGGACAACCTGCTAATGTGGTCACTTACACTTCTATATTAGATGCATTGTTTAAAAACAATCAGGTTGACAAGGCAATTGAATTATTAGCGAAGATCAAAGACCAAGGAATTCAGTtaaatatgtatacatacacTATACTTGTCAACGGGCTATGCAAAAATGGAAGAATTAAGGATGCACTAGAGGTTTATCGGGATCTTTTGATTAAAGGCTACCATCTTGATGTGAGGATGCATACTGTTATGATTGATGGGCTATGTAAAGAGGGCTTGTTTGATGAAGCATTGTCCTTAATGTCAAAAATGGAAGATAACGGTTGCTCCCCTAATGCCGTAACTTACAAAACTCTTATTCTTGCTTTGTTGAAAAACGACAAGAATGAGAAGGCGGTGAAACTTCATCGTGAAATGATTGCTAGAGAATATGGAAGGGTAATTCAAATGAAGAACTTCATTGTTGAAACAATATGTCTCCATACCTACCTAGTGAGGAAAGTTGATTTGCTTGATGGAGTTTCGATTGTTCGATCTGAGAAGGTGAAGGATGAGGTTGTTTTGGATGGAAATGACATTGAACTTGTTTCAAGGTCATGTGCCCTTATTAACCAGAAATGCCATGTTAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATTTATGTCAGTGAGAAGGGATCAGTAGTGACTGAAGAATAG 873 0.3654 MIHGLCKNKMVDEAVNLFKEMHLKSMAPDIITYTTLIYGLCIVGRISDVWDLLDEMHDRGQPANVVTYTSILDALFKNNQVDKAIELLAKIKDQGIQLNMYTYTILVNGLCKNGRIKDALEVYRDLLIKGYHLDVRMHTVMIDGLCKEGLFDEALSLMSKMEDNGCSPNAVTYKTLILALLKNDKNEKAVKLHREMIAREYGRVIQMKNFIVETICLHTYLVRKVDLLDGVSIVRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGSVVTEE 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01499 290 SUPERFAMILY Ribosomal protein L6 217 283 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu07g01499 290 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Tsu07g01499 290 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Tsu07g01499 290 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 28 IPR002885 -
Tsu07g01499 290 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Tsu07g01499 290 Pfam PPR repeat family 138 180 IPR002885 -
Tsu07g01499 290 Pfam PPR repeat family 64 112 IPR002885 -
Tsu07g01499 290 Pfam PPR repeat family 1 41 IPR002885 -
Tsu07g01499 290 PANTHER OS10G0495100 PROTEIN 1 202 - -
Tsu07g01499 290 Gene3D Tetratricopeptide repeat domain 59 129 IPR011990 GO:0005515
Tsu07g01499 290 Gene3D Tetratricopeptide repeat domain 1 58 IPR011990 GO:0005515
Tsu07g01499 290 SUPERFAMILY TPR-like 29 127 IPR011990 GO:0005515
Tsu07g01499 290 TIGRFAM PPR: pentatricopeptide repeat domain 66 99 IPR002885 -
Tsu07g01499 290 TIGRFAM PPR: pentatricopeptide repeat domain 137 170 IPR002885 -
Tsu07g01499 290 TIGRFAM PPR: pentatricopeptide repeat domain 101 134 IPR002885 -
Tsu07g01499 290 TIGRFAM PPR: pentatricopeptide repeat domain 1 29 IPR002885 -
Tsu07g01499 290 TIGRFAM PPR: pentatricopeptide repeat domain 31 61 IPR002885 -
Tsu07g01499 290 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Tsu07g01499 290 Gene3D - 188 290 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu07g01499 290 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 202 - -
Tsu07g01499 290 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Tsu07g01499 290 Pfam Ribosomal protein L6 223 277 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Tsu07g01499 290 ProSitePatterns Ribosomal protein L6 signature 2. 262 283 IPR002359 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01499 Tsu-Chr7 13579781 13582560 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01499 202 290 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 73.034 6.18e-37 128