Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01485 atggaagaagaagatggtaatgatgataatgagatgatgatgatgaagaatgtGGTGAGAGCTGTGCCATTTTTTCAACTATTAAGCTATGCTGATTATGTGGATTGGATTCTTATGGGTTTGGGAACTTTAGGTTCCATTGTGCATGGCATGGCACTTCCTGTTGGGTATTTGTTGTTAGGAAAAGCTCTTAATGCTTTTGGAAATAATATTCATGACATTAATGCTATGGTTCCTGCTCTTAAAAAGGTTGTTCCATTTGTATGGTACATGGCCATTGCCACATTTCCTGCTGGAGTACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATCACGGCTAAGATTAGCATATCTAAAAGCAGTCCTAAGCCAAGAAATAGGAGCTTTTGATACAGAATTAACAAGTGGAAAAGTTATCACAGGAATAAGCAAGCACATGAGTGTAATACAAGATGCCATTGGTGAAAAGTTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCCGGAATTGTGATCGCCGCGATATGCTGTTGGGAAGTAGCACTTCTATGTTTAGTGGTTGTCCCTCTTATTCTTATTATTGGAGCAACTTACACTAAGAAAATGAACAGAATCTCAACTACTAAATTGTTTTACCATTCTGAAGCCACTTCTATGATAGAGCAGACAATATCTCAAATAAAAACGGTATATGCGTTTGTTGGAGAGGGATTAGCAATCAAATCCTTCACAGAGAACATGGAAAAACAGTATTTCATAAGCAAAGGGGAGGCACTTGTGAAAGGAGTTGGAACAGGAATGTTTCAAACTGTGAGTTTTTGTTCTTGGTCTCTTATTATATGGGTTGGAGCTGTTGTTGTCAGAGCCGGGAGAGCTAAGGGAGGAGATATAATAGCTGCAGTAATGAGTATTCTTTTTGGTGCCATATCTATCACTTATGCAGCACCAGACATGCAAATATTCAATCAGGCGAAAGCTGCCGGGTATGAGGTCTTCCAAGTGATCCAAAGAAAGCCGCTAATACACGATGAATCAAAAGGGGAGATGCCTAGTAATATTAACGGTTACATTGAGCTTCGAAATGTTCACTTTTCATACCCATCACGGCCGGAGAAACCTATCCTTCAAGGACTGTCATTGTCCATACCAGCAGGAAAGACAGTAGCTCTAGTTGGTAGCAGTGGCTGTGGAAAGAGCACTGTTATTTCCCTCATAACTAGGTTTTATGACCCCATGCGAGGAGAAATTTTTATTGACAGTCACAATATCAAGGACCTCGATCTGAATTTCCTTCGGAGTAATATAGGGGCCGTTTACCAAGAACCATCACTCTTCACAGGCACGATCAAGGACAACTTGAAACTGGGAAAGATGGACGCGGATGATGAAGAGATTCAAAAGGCAGCAGTGATGTCCAATGCACACTCTTTCATATCACAGCTTCCTAATCAATACCTAACTGAGGTAGGACAAAGGGGAGTTCAAGTATCGGGAGGTCAGAAACAGAGAATTGCAATTGCAAGAGCCATTCTGAAAAATCCTCCAATTCTTTTGCTTGACGAGGCCACTAGTGCCCTTGATTCAGAGTCGGAAAAGCTGGTTCAAGAAGCACTTGATACAGCTATGCGGGGTAGGACTGTCATCTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAGATATGATTGCTGTAGTGGAGAATGGACAAATTGTAGAGACAGGAACACACCAGAGTTTGTTGGAGACAAGCAAATTCTATAGTACATTATTCAGCATGCAGAACCTTGAATCAGCTCCTGAACTAAGAACTAcaatttccaaaaataaaagtGCCCGCCAAGAAGCCAGTATTGATGAAACTAGACCATTACCAGATACACAGAGAGAGGTTCAAAGAGATCTGACAGAGCCTCATGTGCTCAAAGAACAAAACGAGATGAACAtaagagaagaaaatatatttttcagaATTTGGTTTGATTTAAAAAAGAAGGAGCTGGTGAAGATTGCTATCGGCTCGTTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCGTTTTTCGGATTCTATATCATCACAATAGGAGTAGCATACTTCGAAGAAGATGCAAAACGAAAAGTTGGAATGTACTCAGCCATCTTCTCTGGAATAGGGTTGCTTTCACTATTTAGCCACACCTTCCAGCATTACTTCTTTGGAGTGGTTGGAGAAAAGGCCATGTCAAATTTCAGACTTGCTCTATATTCAGGTGTGCTTAGTAACGAGGTAGGCTGGTTTGACAAACCTGAGAACACTGTCGGCTCATTAACATCACGTATCATCAGTGATACTGCCATGGTCAAAATCATAATTGCTGATCGCATGTCAGTGATTGTGCAATGTGTTTCCTCCATACTTATAGCAACAAGTGTTAGCATGTATGTCAACTGGAGAATGGGTTTGGTAGCATGGGCAGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCAGCCAAAGGATTTTCAGGTGACTATTCTGCTACACATTCAGACCTTGTTGCTCTTGCGTCTGAGTCCACGACCAACATAAGAACTATTGCATCATTTTGTCATGAAGAACAAGTACTGAAGAAAGCCAAAATATATCTGGACATTCCAAAGAAAAAATACAGGAAAGAAAGTATCAAATACGGCATCATTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACACGCGGTTGCTTTGTGGTACACAACAATTCTTGTTGACAGACGGCAAGCCACCTTTGAAAATGGAATAAGAGCATACCAAATTTTTTCACTCACAGTTCCTTCTATCACAGAATTATACACACTGATCCCAACTGTTATCACTGCCATCAATATGCTTACCCCAGCATTCAAAACCTTTGACCGTAAAACTGAAATTGAACCAGATATACCGGATGATTCCCAACCCGAGAGGATCCAAGGAaatgttgaatttgaaaatgtaaATTTCAAGTACCCTTTAAGACCTGAAGTGACTGTTCTTGAAAATTTCAGTTTACAAATTGAAGCCGGATCTAAGGTTGCTTTTGTAGGACCAAGTGGCGCTGGAAAATCATCTGTATTGGCTCTTTTGCTGAGATTTTATGATCCAGTGGTGGGAAAAGTATTAATTGATGGGAAAGACTTGAAGGAATATAATCTAAGATGGTTAAGGACACAGATAGGGCTGGTACAACAAGAGCCACTGCTTTTTAACTGCTCAATTAGAGACAATATTTGCTATGGCAATAAAGCGGCTTCTGAAAGTGAAATTGTGGAGGTTTCAAGAGAAGCAAATATACATGAATTTGTAAGTAATCTACCAAATGGATATGACACTGTTGTTGGAGAGAAAGGTTGCCAGCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCAGCAATATTACTCCTTGATGAAGCAACGAGTGCCCTCGATGCTGAGTCCGAAAGAACTATAGTAAATGCAATTAAAGCAATGAATCTGAAGGAAGAAACTGGTTTGTGTTCAAGAATCACTCAGATCACAGTAGCTCATAGACTTTCAACAGTCAGAAACTCGGATACCATAATTGTCATGGAAAAAGGTAGAATTGTAGAGACGGGCTCCCACTCAACCCTAATATCAGTGGATGCAGGACTTTATTCAAGATTATTCAGACTGCAAAGCTTTGACGAAACCTCATAG 3744 0.3977 MEEEDGNDDNEMMMMKNVVRAVPFFQLLSYADYVDWILMGLGTLGSIVHGMALPVGYLLLGKALNAFGNNIHDINAMVPALKKVVPFVWYMAIATFPAGVLEIGCWMYASERQLSRLRLAYLKAVLSQEIGAFDTELTSGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIAAICCWEVALLCLVVVPLILIIGATYTKKMNRISTTKLFYHSEATSMIEQTISQIKTVYAFVGEGLAIKSFTENMEKQYFISKGEALVKGVGTGMFQTVSFCSWSLIIWVGAVVVRAGRAKGGDIIAAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFQVIQRKPLIHDESKGEMPSNINGYIELRNVHFSYPSRPEKPILQGLSLSIPAGKTVALVGSSGCGKSTVISLITRFYDPMRGEIFIDSHNIKDLDLNFLRSNIGAVYQEPSLFTGTIKDNLKLGKMDADDEEIQKAAVMSNAHSFISQLPNQYLTEVGQRGVQVSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALDTAMRGRTVILIAHRLSTVVNADMIAVVENGQIVETGTHQSLLETSKFYSTLFSMQNLESAPELRTTISKNKSARQEASIDETRPLPDTQREVQRDLTEPHVLKEQNEMNIREENIFFRIWFDLKKKELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFEEDAKRKVGMYSAIFSGIGLLSLFSHTFQHYFFGVVGEKAMSNFRLALYSGVLSNEVGWFDKPENTVGSLTSRIISDTAMVKIIIADRMSVIVQCVSSILIATSVSMYVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYSATHSDLVALASESTTNIRTIASFCHEEQVLKKAKIYLDIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQATFENGIRAYQIFSLTVPSITELYTLIPTVITAINMLTPAFKTFDRKTEIEPDIPDDSQPERIQGNVEFENVNFKYPLRPEVTVLENFSLQIEAGSKVAFVGPSGAGKSSVLALLLRFYDPVVGKVLIDGKDLKEYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNKAASESEIVEVSREANIHEFVSNLPNGYDTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVNAIKAMNLKEETGLCSRITQITVAHRLSTVRNSDTIIVMEKGRIVETGSHSTLISVDAGLYSRLFRLQSFDETS 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01485 1247 SUPERFAMILY ABC transporter transmembrane region 668 981 IPR036640 GO:0005524|GO:0016021
Tsu07g01485 1247 Pfam ABC transporter 1013 1162 IPR003439 GO:0005524
Tsu07g01485 1247 ProSitePatterns ABC transporters family signature. 1134 1148 IPR017871 GO:0005524
Tsu07g01485 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Tsu07g01485 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 978 - -
Tsu07g01485 1247 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Tsu07g01485 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 995 1239 IPR003439 GO:0005524
Tsu07g01485 1247 Pfam ABC transporter transmembrane region 677 934 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g01485 1247 Pfam ABC transporter transmembrane region 40 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g01485 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 960 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g01485 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu07g01485 1247 SMART AAA_5 389 581 IPR003593 -
Tsu07g01485 1247 SMART AAA_5 1022 1216 IPR003593 -
Tsu07g01485 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Tsu07g01485 1247 Gene3D - 352 600 IPR027417 -
Tsu07g01485 1247 PANTHER BRACHYTIC2 10 1243 - -
Tsu07g01485 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1241 IPR027417 -
Tsu07g01485 1247 SUPERFAMILY ABC transporter transmembrane region 27 348 IPR036640 GO:0005524|GO:0016021
Tsu07g01485 1247 MobiDBLite consensus disorder prediction 618 642 - -
Tsu07g01485 1247 CDD ABC_MTABC3_MDL1_MDL2 995 1241 - -
Tsu07g01485 1247 Gene3D ABC transporter type 1, transmembrane domain 658 958 IPR036640 GO:0005524|GO:0016021
Tsu07g01485 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 599 IPR027417 -
Tsu07g01485 1247 PANTHER ABC TRANSPORTER B FAMILY 10 1243 - -
Tsu07g01485 1247 Gene3D ABC transporter type 1, transmembrane domain 26 618 IPR036640 GO:0005524|GO:0016021
Tsu07g01485 1247 MobiDBLite consensus disorder prediction 612 642 - -
Tsu07g01485 1247 CDD ABC_MTABC3_MDL1_MDL2 362 599 - -
Tsu07g01485 1247 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Tsu07g01485 1247 Gene3D - 985 1246 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01485 Tsu-Chr7 13373183 13380188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01485 16 1246 Calmodulin-binding Proteins AT2G36910 40.934 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01485 K05658 - zju:107414909 1801.18