Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01474 ATGATTCCTCGAACGTGTTCTCGTTTTCGTGGTAGTTCTGAGGAAGAGAATAGTTCTTTGAGGGATCGGGTTGAGGAATTGAGCTGTAATGAGGTCATTGGtggtagtggtggtggtggtatgaTGTTTTCGGAGGAGGCTCGTCGTGCTATTGCTGAAGAGAGAGTTCCTCTTGTGTCTTTGGCTGATGTTGTCGGTGGTGGTGTTGGTGGTGGTGATAGAGATAGTTCTTCTAACCATCCAAGGATTGATTTTCAGTATATTGCTAAGCTTGTTGAACAGattcttcctttttctcttttgttgttGATTGTTTTGATCAGACAACATTTTCAAGGTTTCTTTGTTACAATCAGTTTATCAGCTGTGATGTTCAAGTCGAATGAACTTGTTAAGAAACAGACTGCTCTAAAGGGAGATCAGAAAATCTCTGTTCTTCTTGGTGTTTCTTTATCCTTCATGCTGTATGTGATATGCATTTACTGGTGGTATCAAGATGATGATATTCTATACCCTCTGGCCATGTTTCCGCCAAAATCAACACCACCTTTCTGGCATGCAATATTCATCATTTTGGTTAATGATATATTGGCGCGGCAAGCAGCAATGGCTTTCAAGTGTCTGTTGCTGGTTTACTACAAAAATGGCAGATGCCATAATTTCCGTCGACAGGCTCAAATGTTAACTCTAGTTGAGTACACACTGCTGCTGTATCGTGCTTTCTTGCCAGCACCAGTTTGGTACCGATTTTTCTTTAACAAGGACTTTGGAAGTCTCTTCTCATCACTGATCACAGGATTGTATCTAACGTTCAAGCTAACATCTTCAGTTGAGAAGATCCAGTGCTTAATTTGTGCTTTGAAAGCGTTGTCAAAAAAGGAAGTTCATTATGGGGTTTATGCCACAACAGAACAGGTAAATGCTGCTGGTGATCTGTGCGCTATATGCCAAGAGAAGATGCATGCTCCTATTCTGTTGTGCTGTAACCATATGTTCTGCGAGGAGTGTGTATCCGAATGGTTTGAGAGAGAATGGACTTGCCCGTTATGCAGGACATTGGTAAAACCTTCTGATCTGCGGACCTTCGGAGATGGATCAACAAGTTTGTTTTATCAGTTGTTTTGA 1125 0.3982 MIPRTCSRFRGSSEEENSSLRDRVEELSCNEVIGGSGGGGMMFSEEARRAIAEERVPLVSLADVVGGGVGGGDRDSSSNHPRIDFQYIAKLVEQILPFSLLLLIVLIRQHFQGFFVTISLSAVMFKSNELVKKQTALKGDQKISVLLGVSLSFMLYVICIYWWYQDDDILYPLAMFPPKSTPPFWHAIFIILVNDILARQAAMAFKCLLLVYYKNGRCHNFRRQAQMLTLVEYTLLLYRAFLPAPVWYRFFFNKDFGSLFSSLITGLYLTFKLTSSVEKIQCLICALKALSKKEVHYGVYATTEQVNAAGDLCAICQEKMHAPILLCCNHMFCEECVSEWFEREWTCPLCRTLVKPSDLRTFGDGSTSLFYQLF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01474 374 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 16 374 IPR044235 GO:0061630|GO:1904294
Tsu07g01474 374 SUPERFAMILY RING/U-box 311 360 - -
Tsu07g01474 374 ProSiteProfiles Zinc finger RING-type profile. 313 351 IPR001841 -
Tsu07g01474 374 Pfam Zinc finger, C3HC4 type (RING finger) 311 354 - -
Tsu07g01474 374 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 374 - -
Tsu07g01474 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Tsu07g01474 374 MobiDBLite consensus disorder prediction 1 21 - -
Tsu07g01474 374 CDD RING-HC_RNFT1_like 312 351 - -
Tsu07g01474 374 ProSitePatterns Zinc finger RING-type signature. 328 337 IPR017907 -
Tsu07g01474 374 SMART ring_2 313 350 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01474 Tsu-Chr7 13288527 13294893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01474 8 374 C3H Transcription Factor Family AT5G01960 61.853 9.55e-171 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01474 - K22379 gmx:100784614 533.487