Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01472 ATGGGGAGAAGACCTGCAAGATGTTATCGTCAGATCAAGAACAAGCCATACCCAAAATCACGGTTTTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTTGGAATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTTGTTAGTTGGGAGAAGGAAAATGTTTCTAGTGAAGCATTGGAAGCTGCACGTATCGCGTGTAACAAGTATATGTCGAAATTTGCTGGAAAGGATGCTTTCCATTTGAGGGTTAGAGTTCATCCTTTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGAGCTTTCGGAAAGCCACTCGGTACTTGTGCTAGAGTTGCTATTGGTCAGGTTCTTCTTTCTGTCCGTTGTAAGGACACCAATAGCCATCATGCACAGGAGGCTCTCCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATCGTCAGCAGGAAGTGGGGTTTCACCAAGTTTAACCGTGTTGATTACCTCAAGTACAAGTCAGAGAACAGAATTTTGCCTGATGGTGTGAATGCCAAGCTTCTTGGGTGCCATGGACCTTTGGCTAACCGTCAACCTGGAAGAGCTTTCATTGATGCTAGTACTCCTACTGCTTAG 672 0.4449 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDTNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRVDYLKYKSENRILPDGVNAKLLGCHGPLANRQPGRAFIDASTPTA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01472 223 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tsu07g01472 223 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Tsu07g01472 223 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tsu07g01472 223 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Tsu07g01472 223 PANTHER 60S RIBOSOMAL PROTEIN L10 1 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tsu07g01472 223 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Tsu07g01472 223 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tsu07g01472 223 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 219 - -
Tsu07g01472 223 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01472 Tsu-Chr7 13276981 13279156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01472 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.727 4.71e-146 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01472 K02866 - pvy:116105818 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02659 05 36511914 36514785 Tsu07g01472 07 13276981 13279156 PCT