Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01445 ATGTCCTCCGATGACATCAATCTCGCTCCTGACCAGAGAATCGAAAATGGCCTAACCTCCCCACTCGTCTTCCAAGACGACACTCTCCGTTTCAACTGCGGCGGTGCACCACAGAGACAAGTCGGTGATCCGGTTCCTAAAACCCGCGAAGTCGGCGGTTTCATTGACGACAAGATGTTCACCGTCAATCGCGATCGGTATTTCACTTCCCAGGGTACAGAGTTCCGCCGGAGCGTTTTCACCGATCGGTCTGATCACAGGGATAGTTCAGATGTACTGAACTGGAGCGCGGAAACTCCAAGCAGTGATGATTCCGATGGGGAAGATGACGAAGATGATGACGAAGACGATGATGGAAACACCGCAGCAGATAGACTCGTTAGTATCGGTGACGACAGAAGCAAACGCAATTCCAATGTAATTATTGATGTTAATAATAACAATGGTGGTGGTGTTGCAAATGGGAAAGCTCAGCATCATTCTCCTTACGTTTCTAGTAGAGAGATATTGGGAAAGGATGGTGAAATTGTACAGTTGGTGCATAACAATGCGAGTGGCGCCACTGGTGAGGATCAACTGCGAGAAAGATTAGGTAAAACTCAGAACTCTGTAACTGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGTGGGGAAGGATCACCTTCTGTGCAGAAAGTTATGGTGGATGACAATGGTTGTGGGTTTAGTGGAAGAAAGGATGCCGTGTATTCAAGCGAGTCTGGGGAGTCATTGAGGGCAATTCTTTCGGATCCTGTTACTGGAACGCTAATGGATGATGCAATGATATTACCTTGTGGACATTCATTTGGTGGAGGTGGAATTCAGCATGTTATTAGAATGaAGGCTTGTTGTACCTGTTCTCAACCCACACTGGAGGAGTCAATATCTCCAAATCTTTCACTTCGAGATGCTGTGCAGGCATACCGTCGGGAAGAAGAGTCACAATTTTACCGGTCatccaaaagaaaaagagaacGATTTGATCAGGGTGGTTTTGGAGAGAGTGCTGTTGTTGAACCCTCAAGGAGTAGAGGTGTTCAATTTCCATTTGCTGTGACGGACCGGGTTATCATAAAGGGGAACAAAAGGACACCGCAACGCTTTGTTGGGCGTGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAATTACAGTACCGTTCCCTTGCTAAAGTTTCCGATGATCCTTCAAAACCTGTCTCCAGTAACATGGGACCTAATTGGCTTCAGATTTGCCGAACAACATCATAA 1326 0.4563 MSSDDINLAPDQRIENGLTSPLVFQDDTLRFNCGGAPQRQVGDPVPKTREVGGFIDDKMFTVNRDRYFTSQGTEFRRSVFTDRSDHRDSSDVLNWSAETPSSDDSDGEDDEDDDEDDDGNTAADRLVSIGDDRSKRNSNVIIDVNNNNGGGVANGKAQHHSPYVSSREILGKDGEIVQLVHNNASGATGEDQLRERLGKTQNSVTVAETDCEEYYSHYLQGGEGSPSVQKVMVDDNGCGFSGRKDAVYSSESGESLRAILSDPVTGTLMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTLEESISPNLSLRDAVQAYRREEESQFYRSSKRKRERFDQGGFGESAVVEPSRSRGVQFPFAVTDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKPVSSNMGPNWLQICRTTS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01445 441 MobiDBLite consensus disorder prediction 141 160 - -
Tsu07g01445 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 325 IPR013083 -
Tsu07g01445 441 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 66 434 - -
Tsu07g01445 441 SUPERFAMILY RING/U-box 254 326 - -
Tsu07g01445 441 MobiDBLite consensus disorder prediction 81 132 - -
Tsu07g01445 441 ProSiteProfiles U-box domain profile. 255 327 IPR003613 GO:0004842|GO:0016567
Tsu07g01445 441 Coils Coil 441 441 - -
Tsu07g01445 441 MobiDBLite consensus disorder prediction 102 120 - -
Tsu07g01445 441 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 66 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01445 Tsu-Chr7 12927526 12933298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01445 203 434 Plant U-box Gene Family AT5G05230 62.762 9.06e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01445 - - adu:107470194 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01445 07 12927526 12933298 Tsu07g01445 07 12927526 12933298 ECH