Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01439 ATGTCTCCCTGTCAACGCCTCCACCGTCTTTTACTCGACAGAAATTCAACTTCAACAACTGCATCAGGTAACATGCATATGTCAAAGCAAATTTCCGTAGACACAGATGACAAAACTTTTAACACAGTGGCGGTGATTATCGTAGCAGTTATCATACTTATTGTGTTATTATACTTCTTAATTGTAATGTGGGCTGCTCGAATAAATAGTCGCAGGGCGACACGAGCTCAAAGAATAGCTAATTTAGGTAGTGCATTGCATAAGATCCCTATAGTTGTTTTCAGTTCAGGTAGTAATAGTATTAGTACTAGTTTTGTAGGCACAGATTGTCCAATTTGTCTTGGGAAGTTTATGGATGGTGAGAAAGTTAGAGTATTGCCAAAATGTAGCCATGGATTCCATGTAGAGTGTATAGATAAATGGCTGCTTTCACACTCTTCTTGTCCTACTTGTAGACAGTCTTTGCTTGAGCATCCAACTAGCTCTGAAGCTTCATCTGTAACTGTGATTGTTTCGGCAACCGTAAGGACCACAAACCAACGGCTTTAA 549 0.3971 MSPCQRLHRLLLDRNSTSTTASGNMHMSKQISVDTDDKTFNTVAVIIVAVIILIVLLYFLIVMWAARINSRRATRAQRIANLGSALHKIPIVVFSSGSNSISTSFVGTDCPICLGKFMDGEKVRVLPKCSHGFHVECIDKWLLSHSSCPTCRQSLLEHPTSSEASSVTVIVSATVRTTNQRL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01439 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 157 IPR013083 -
Tsu07g01439 182 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Tsu07g01439 182 PANTHER RING-H2 FINGER PROTEIN ATL74 8 170 - -
Tsu07g01439 182 SUPERFAMILY RING/U-box 103 158 - -
Tsu07g01439 182 Pfam Ring finger domain 109 152 IPR001841 -
Tsu07g01439 182 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 170 - -
Tsu07g01439 182 SMART ring_2 110 151 IPR001841 -
Tsu07g01439 182 CDD RING-H2_PA-TM-RING 109 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01439 Tsu-Chr7 12877449 12877997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01439 7 160 C3H Transcription Factor Family AT3G10910 41.954 5.01e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01439 - K19040 mtr:MTR_3g094000 159.073