Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01438 ATGTCTCTCCGTCAACGCGTCCACCTTCTTTTACTCGACAAAAATTCAGCTTCAAAAACTGCATCAGGTAACATGTTTAAGCCAATGCAGCCAATGCAAAATTTCGCACTTACAGGTAGTAAGAGTATTAATACTAGTTTTGTGGGCACAGATTGTCCAATTTGTCTTGTGGAGTTTATGGATGGTGAGAAAGTTAGAGTATTGCCAAAATGTAACCATGGATTCCATGTAGAGTGTAAAGATAAATGGCTGCTTTCACACTCTTCTTGTCCTACTTGTAGACAGTCTTTGCTTGAGTATCTAACTGGCTCTGAAGCTTCATCTGTAATTGTTGCTGCAGCTGTCGGGACCACAAATCAACGGCTTTAA 369 0.4038 MSLRQRVHLLLLDKNSASKTASGNMFKPMQPMQNFALTGSKSINTSFVGTDCPICLVEFMDGEKVRVLPKCNHGFHVECKDKWLLSHSSCPTCRQSLLEYLTGSEASSVIVAAAVGTTNQRL 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01438 122 CDD RING-H2_PA-TM-RING 51 94 - -
Tsu07g01438 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 99 IPR013083 -
Tsu07g01438 122 PANTHER RING-H2 FINGER PROTEIN ATL74 45 106 - -
Tsu07g01438 122 ProSiteProfiles Zinc finger RING-type profile. 52 94 IPR001841 -
Tsu07g01438 122 Pfam Ring finger domain 51 94 IPR001841 -
Tsu07g01438 122 SMART ring_2 52 93 IPR001841 -
Tsu07g01438 122 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 45 106 - -
Tsu07g01438 122 SUPERFAMILY RING/U-box 51 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01438 Tsu-Chr7 12874361 12874929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01438 36 98 C3H Transcription Factor Family AT3G10910 69.841 1.85e-25 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01438 K19040 - mtr:MTR_3g094000 117.857