Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01437 ATGTCTCTCCATCAACGCCTCCACCGTCTCTTACTCGACACAGATTCAGCTTCAACAAATGCATCAGGTAACATGAATAAACCAAGGGAATCTTTTGTAATCACAGGTGACTCAAATATTGACTCCAACATGGTGTTTATCTTAGCAGCTTTACTTTGTACACTTATTTTAGTATTAGGACTCAACACAATTGTAAGGTGTGCTCTAAGATGTAGTCACAGGTATTTTGAGACACAAGATGAAAGAATAACTCGTTTAGCATCAAAGGGTTTAAAGAAGAGTGCATTGAGTAAGATCCCTATAGTTGTTTATGATTCAGgtagtagtagtattagtaCTAATTTTGTAGCCACAGATTGTCCGATTTGTCTTGGAGAGTTTATGGATGGTGAGAAAGTTAGAGTGTTGCCAAAATGTAACCATGGATTTCATGTTAAGTGTATAGATAAATGGCTGCTTTCACACTCCTCTTGTCCTACTTGTAGACAGTCTTTGCTTCAGCATCCATCTAACTCTGAAGCTTCATCTGTAGCTGTGATTGTTGCTGCAGCTGTAGGGACCTCAAATCAACGGATTTAA 579 0.3748 MSLHQRLHRLLLDTDSASTNASGNMNKPRESFVITGDSNIDSNMVFILAALLCTLILVLGLNTIVRCALRCSHRYFETQDERITRLASKGLKKSALSKIPIVVYDSGSSSISTNFVATDCPICLGEFMDGEKVRVLPKCNHGFHVKCIDKWLLSHSSCPTCRQSLLQHPSNSEASSVAVIVAAAVGTSNQRI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01437 192 SUPERFAMILY RING/U-box 119 170 - -
Tsu07g01437 192 SMART FANCL_C_2 116 175 - -
Tsu07g01437 192 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Tsu07g01437 192 PANTHER RING-H2 FINGER PROTEIN ATL74 8 177 - -
Tsu07g01437 192 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 177 - -
Tsu07g01437 192 Pfam Ring finger domain 119 162 IPR001841 -
Tsu07g01437 192 SMART ring_2 120 161 IPR001841 -
Tsu07g01437 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 167 IPR013083 -
Tsu07g01437 192 CDD RING-H2_PA-TM-RING 119 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01437 Tsu-Chr7 12871986 12873049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01437 7 170 C3H Transcription Factor Family AT3G10910 52.542 2.50e-51 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01437 - K19040 mtr:MTR_3g094000 249.21