Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01435 ATGGCTATTGTAGCTACTTCCTACATTTCAATTCTTTGCATTTTTGTTCTTAGCTTATGCCTTAAAAGCACTTTTGGTGACTATGGAGGTGGATGGGAAAGTGCTCATGCCACATTTTATGGTGGTGGAGATGCATCAGGCACAATGGGAGGGGCTTGTGGTTATGGAAATTTATATAGCCAAGGATATGGAACTAACACTGCTGCACTAAGTACTGCTCTTTTCAACAATGGACTGAGTTGTGGATCTTGCTATGAGATGAGATGTGACAGTGACCCTAAATGGTGCCTTCCCGGCAGCATAATGGTCACTGCCACAAACTTCTGCCCACCAAACTTTGCAGAGTCTAACAGCAATGGTGGATGGTGTAATCCTCCCCTTCAACACTTTGATCTTGCTGAGCCTGCTTTCTTACAAATTGCTCAATACAAAGCTGGAATTGTACCTATTTCCTTCAGAAGAGTCCCATGTGTGAAGAAAGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTAGTTTTGGTGACAAATGTTGGTGGAGCTGGAGATGTACATTCTGTATCCATCAAAGGATCAAAGACTGGATGGCAAACTATGTCTAGGAACTGGGGGCAAAATTGGCAAAGCAATAACTACCTCAATGGTCAAAGCCTTTCTTTCCAAGTTACTACAAGTGATGGCAGAACAATCACTAGCAACAACGTTGTGCCTGCTAATTGGCAATTTGGACAGACATTTACAGGGGGACAATTTTAG 765 0.4248 MAIVATSYISILCIFVLSLCLKSTFGDYGGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDSDPKWCLPGSIMVTATNFCPPNFAESNSNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPISFRRVPCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTITSNNVVPANWQFGQTFTGGQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01435 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Tsu07g01435 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Tsu07g01435 254 PANTHER EXPANSIN 14 254 - -
Tsu07g01435 254 PANTHER EXPANSIN-A15 14 254 IPR002963 GO:0009664
Tsu07g01435 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Tsu07g01435 254 Gene3D - 20 157 IPR036908 -
Tsu07g01435 254 SMART dpbb_1 67 152 IPR007112 -
Tsu07g01435 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Tsu07g01435 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Tsu07g01435 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Tsu07g01435 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Tsu07g01435 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Tsu07g01435 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Tsu07g01435 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Tsu07g01435 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Tsu07g01435 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Tsu07g01435 254 Pfam Lytic transglycolase 67 151 IPR009009 -
Tsu07g01435 254 Gene3D - 161 254 IPR036749 -
Tsu07g01435 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Tsu07g01435 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Tsu07g01435 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Tsu07g01435 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Tsu07g01435 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Tsu07g01435 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Tsu07g01435 254 SUPERFAMILY Barwin-like endoglucanases 14 180 IPR036908 -
Tsu07g01435 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01435 Tsu-Chr7 12853026 12854934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01435 7 254 Expansin Gene Family AT2G40610 78.800 1.81e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01435 - K20628 gmx:547673 478.404