Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01378 ATGTGTATGTTAAAGGTGGCGAATCCAATAGACAAAGTTgttatcaaaagagaaaatataaatgattcttctccaacATTGTCAACTGAAATGATATTTCCAGGTTTGAATAGAGATAGAGAAATGTCTGCAATGATCTCAGCTTTGACTCATATTGTCTCTGGTGATGTTCCTGTTACAAACGGTGCTGATAATAATATTCATTATAATGCAAGTGAAGGAAGTTTTGATTTTACACAAAACATTAACATGTCTTCTTctacaacaacaacacaatCTTTGTCTTCTTCATCTAATTATGTTACTAGTTCTTCTTTTAAGAGAACTAGGGATGAAGATGATAGATCTTTTGGTGATCAATTTTTGCTTCAAGGTGGTTACTCCCCTGCTTTACCAACAACAAATGCAGAAAGTTCAAGAAATATTaggacaacaacaacaagagtAACAACAACAAGAGAAATGGGAAATGCAGTATATGAATATAAAAGAACAGAGAATGTAGTAAGAGAAggagaagagaaaagaaaatacaGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGTACATTTGAAACTGCTGAAGCAGCTGCTAGAGCATATGATGAAGCTGCTCTTCGTTTTAGAGGCAACAAAGCTAAACTCAATTTCCCTGAAAATGTTACTCTTCGTCACCCTCCAACAACTTCGAATTCACCAAATTCAATTGTTTCGATTACAACTTCAACTGATCCTGTTGTTCATACTAGGCCTTTCAGTTCTTCTTCTCAACCGTCAACTAATTTTTATGATTCGTTTCAGTTTTTGGGTATTCCTTCTACAAGGAATGTTTTTGATGATAATGCGGTTTTGACTTCTACAATGGCTTCCCATCTTCAATCTTCTTCGTCATCATCAGCAGCGTCATCTTCTATGCAGGCGGATACTTCAATTTCTCCATTTTATAATTCTATCCCGTTGCCACCGTGGTCGGCTTCGGATCATAGCTCCTCTTCCTCTAGGTGA 1053 0.339 MCMLKVANPIDKVVIKRENINDSSPTLSTEMIFPGLNRDREMSAMISALTHIVSGDVPVTNGADNNIHYNASEGSFDFTQNINMSSSTTTTQSLSSSSNYVTSSSFKRTRDEDDRSFGDQFLLQGGYSPALPTTNAESSRNIRTTTTRVTTTREMGNAVYEYKRTENVVREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRHPPTTSNSPNSIVSITTSTDPVVHTRPFSSSSQPSTNFYDSFQFLGIPSTRNVFDDNAVLTSTMASHLQSSSSSSAASSSMQADTSISPFYNSIPLPPWSASDHSSSSSR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01378 350 MobiDBLite consensus disorder prediction 330 350 - -
Tsu07g01378 350 Pfam AP2 domain 177 226 IPR001471 GO:0003700|GO:0006355
Tsu07g01378 350 SUPERFAMILY DNA-binding domain 177 235 IPR016177 GO:0003677
Tsu07g01378 350 MobiDBLite consensus disorder prediction 88 105 - -
Tsu07g01378 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 37 347 - -
Tsu07g01378 350 MobiDBLite consensus disorder prediction 88 112 - -
Tsu07g01378 350 CDD AP2 177 236 IPR001471 GO:0003700|GO:0006355
Tsu07g01378 350 Gene3D AP2/ERF domain 176 236 IPR036955 GO:0003700|GO:0006355
Tsu07g01378 350 PRINTS Ethylene responsive element binding protein signature 200 216 IPR001471 GO:0003700|GO:0006355
Tsu07g01378 350 PRINTS Ethylene responsive element binding protein signature 178 189 IPR001471 GO:0003700|GO:0006355
Tsu07g01378 350 ProSiteProfiles AP2/ERF domain profile. 177 234 IPR001471 GO:0003700|GO:0006355
Tsu07g01378 350 SMART rav1_2 177 240 IPR001471 GO:0003700|GO:0006355
Tsu07g01378 350 PANTHER DNA-BINDING DOMAIN 37 347 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01378 Tsu-Chr7 12179747 12181382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01378 175 239 AP2-EREBP Transcription Factor Family AT5G61890 84.615 2.46e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g01378 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01378 - - mtr:MTR_3g095190 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01378 07 12179747 12181382 Tsu07g01378 07 12179747 12181382 ECH
Tsu02g00709 02 5978554 5980252 Tsu07g01378 07 12179747 12181382 ECH