Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01371 ATGGATTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAACAAGAAGACAGAGATTCTTctaagaagaagagagaaagtagCGACAAAACCGAAAAGAGCTACAGAAAGCGTGATGAGATCGAAGATGGAACCGAGGAGAAGCGGAGCAGGAGGTCCAGCGGTGGCGACGATGAGCATGTTTCCAGGAAGGATAGAGATCGTGATGATGAACGCGATAAGGAGCGTCATAGGAGTGGGAGAGATAGGGATAGGGATAGAGAGAGTGAGAGGAGTAGCAGAGATAGAGACAGAGATAGGGAGAAGGATAGGGATAGGGAGAGAGATAGGAGAGATAAGGATAAAGAGAGGGAGAGGAGGGAGAGGGAGAaggaaaaggagagagaaagatCCAGGCGGAGTAAGAGTCGTTctgagagagatagagagattgaacgagaggagagagagaggtCTAGGAGAAGCATAAGTCGTTCTGAAAGAGAAAGGGAGAAGGAACGGGAGGAGAGGGAGAGGTCCAGGAGGAGCAGAAGTCGTTCCGACCGTGATTTGGATTTGAGAGATAGCCGGAGATATAGGGAGAAGAAAGAAGCAGCGGAGCCTGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTGGGGTATATTGAATTTTATGATGCAATGTCGGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACTACTGGAGCTGCTGGCGTGACAGGACCATATGGAGCTGTGGACAGAAAACTTTATGTGGGGAACCTTCACTTCAATATGACTGAGAGCCAGTTGAGGGAGatttttgagCCGTTTGGAACTGTGGAGGTTGTGCAACTGCCTCTTGACCTGGAGACAGGACATTGCAAGGGTTTTGGGTTTATTCAATTTGCCCATCTAGAGCATGCCAAGGCTGCCCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCCGAACTATCAAGGTTTCATCTGTAGCAGACCATGTTGGAAGCCAAGATACAACAGCAAAGTCTGCAgactttgatgatgatgaaggtggATTGGCTTTAAATGCCCAATCTAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGAATTGCTGCAAGCATTGGTTTACCTGTGAATGGGTCAGCTCCTGCTCCGCAGGCATTTAGTTTGCCTATTGGTAATCCTGGATTAATACCAGCACTAGCTCTACCAACTCAAATTATGCCTACCCAAGTTGCCGAACCTGTCGGAACCCCCAGCAACTGTTTACtgttgaagaatatgtttgatcCAACCACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAAGATGTAGAAGATGAGTGTTCTAAATATGGGCGGGTGAAGCATATCTATGTTGACAAaaaCAGTGCGGGTTTTGTGTATTTGATGTTTGAAACGGTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGAGGTGGTTTGCACGCAAAATGATTTCAGCTATATACATGCAACCTCAGGTGTATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1731 0.4281 MDFDEYDYLEKTVEEQEDRDSSKKKRESSDKTEKSYRKRDEIEDGTEEKRSRRSSGGDDEHVSRKDRDRDDERDKERHRSGRDRDRDRESERSSRDRDRDREKDRDRERDRRDKDKERERREREKEKERERSRRSKSRSERDREIEREERERSRRSISRSEREREKEREERERSRRSRSRSDRDLDLRDSRRYREKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVTGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVNGSAPAPQAFSLPIGNPGLIPALALPTQIMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEDECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEAKFKGEV 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01371 576 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 574 - -
Tsu07g01371 576 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 406 500 IPR029123 -
Tsu07g01371 576 PANTHER CC1-LIKE SPLICING FACTOR 1 574 - -
Tsu07g01371 576 MobiDBLite consensus disorder prediction 12 210 - -
Tsu07g01371 576 SUPERFAMILY RNA-binding domain, RBD 204 291 IPR035979 GO:0003676
Tsu07g01371 576 SUPERFAMILY RNA-binding domain, RBD 313 565 IPR035979 GO:0003676
Tsu07g01371 576 CDD RRM2_RBM23_RBM39 315 387 - -
Tsu07g01371 576 Gene3D - 477 575 IPR012677 -
Tsu07g01371 576 MobiDBLite consensus disorder prediction 1 210 - -
Tsu07g01371 576 TIGRFAM SF-CC1: splicing factor, CC1-like family 82 572 IPR006509 GO:0003723|GO:0005634|GO:0006397
Tsu07g01371 576 SMART rrm1_1 314 387 IPR000504 GO:0003723
Tsu07g01371 576 SMART rrm1_1 483 560 IPR000504 GO:0003723
Tsu07g01371 576 SMART rrm1_1 212 284 IPR000504 GO:0003723
Tsu07g01371 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 556 IPR000504 GO:0003723
Tsu07g01371 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 385 IPR000504 GO:0003723
Tsu07g01371 576 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 280 IPR000504 GO:0003723
Tsu07g01371 576 CDD RRM3_RBM39_like 481 563 - -
Tsu07g01371 576 CDD RRM1_RBM39_like 212 284 - -
Tsu07g01371 576 Gene3D - 309 405 IPR012677 -
Tsu07g01371 576 Gene3D - 139 299 IPR012677 -
Tsu07g01371 576 Coils Coil 143 177 - -
Tsu07g01371 576 Coils Coil 107 131 - -
Tsu07g01371 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Tsu07g01371 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01371 Tsu-Chr7 12095776 12104489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01371 285 386 Eukaryotic Initiation Factors Gene Family AT4G34110 34.951 1.68e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01371 K13091 - gmx:100802446 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00705 02 5952058 5958508 Tsu07g01371 07 12095776 12104489 ECH
Tsu07g01371 07 12095776 12104489 Tsu07g01371 07 12095776 12104489 ECH
Tsu02g00705 02 5952058 5958508 Tsu07g01371 07 12095776 12104489 PCT