Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01350 ATGTATGCTTCTACTTCTTTTGTTTCACCACTCCTCCATGACCTTGTTGAAAATAATTTCCACTCAAGAAGGTTGCTTCTTCACTCCAATTTAGCTAACCCTCCAATTTCCACAAACATCCATGATTCAACTAAAGATTCTTCATATCTTGGAGATGGTAATTTTGATGCAAATGTAGTTATGGTACTTTCTGTCCTATTATGTGCTCTTATTTGTTCACTTTGTTTGAACTCAATCATAAGGTGTGCATTAAAATGTTCAAATTTAGTTGTGATGAGTGGCGATCCCTCTAATACTCCGGTTCGAGCAACAAACACCGGAATTAAGAAGAAAGCTCTCAAGTCATTCACCACGGTAAGTTACTCGACCGAGCTAAACCTGCCGAGTTTGGACTCAGAGTGTGTGATATGTTTATCGGAGTTCACTAATGGCGATAAAGTACGCCTTTTGCCAAAGTGTAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAGTTCGCATTCGTCTTGTCCGAAATGTAGACAGTGCCTTATTGAGacttgtaaaaaaattgttggatcACAAGGTAGTTCATCTCAACCACAACCTATGTTGTTTCCGGCGCCGGAAACAATTGTAACTATAGCACCACTTGAGCCAGAAGGTTTGGTGAGAAATTATAGGGAGGTTAGCTAA 681 0.3862 MYASTSFVSPLLHDLVENNFHSRRLLLHSNLANPPISTNIHDSTKDSSYLGDGNFDANVVMVLSVLLCALICSLCLNSIIRCALKCSNLVVMSGDPSNTPVRATNTGIKKKALKSFTTVSYSTELNLPSLDSECVICLSEFTNGDKVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSQGSSSQPQPMLFPAPETIVTIAPLEPEGLVRNYREVS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01350 226 SUPERFAMILY RING/U-box 112 181 - -
Tsu07g01350 226 SMART ring_2 134 175 IPR001841 -
Tsu07g01350 226 PANTHER RING-H2 FINGER PROTEIN ATL78 1 225 IPR044602 GO:0016567|GO:0016740
Tsu07g01350 226 CDD RING-H2_PA-TM-RING 133 176 - -
Tsu07g01350 226 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 225 - -
Tsu07g01350 226 Pfam Ring finger domain 133 176 IPR001841 -
Tsu07g01350 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Tsu07g01350 226 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01350 Tsu-Chr7 11898437 11899486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01350 24 180 C3H Transcription Factor Family AT3G10910 45.732 5.84e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01350 K19040 - gmx:100787934 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01350 07 11898437 11899486 Tsu07g01350 07 11898437 11899486 ECH
Tsu02g00689 02 5831955 5832644 Tsu07g01350 07 11898437 11899486 PCT