Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01342 ATGGTTAGAGAAAATAAACTTCATGATCTATGCATCACAGTTCCCACCTTCTTCAAATGCCCAATCTCATTAGATGTAATGAAATCCCCTGTTAGTCTCTGTACCGGAATCACCTACGACCGTTCCAGCATCCAACGGTGGTTAGATGATGGTAATAACACGTGTCCCGCTACCATGCAAACTCTCTACAGTAAAGATATTATTCCTAACCGTACTCTACATAGTCTCATCCAGATCTGGACCGACTCGGTTCATCACCGGGTTAACCCGCCCGTTTCACCTTCAAAAGAACAAGTCCTTCAAGCCATCACTGAATTAACCGATTCCAATGGTTTAAACCGGTTCGGGTTAAATTTAATCACGAAAGTGAACCGTTTCGCTCAAGATTCCGATCAGAACAAAGCTTTTTTAGCGAAATTAGACGGTTTCGTTGCTTTGATGGTTAGTTTACTTGACAATGTCGACGGAAGCGTTGAATTTCTTGAACAAATTTTAACGGCGTTAAGTTTTGTTCTGGAAAAAATTGAAGATCGTGAAGCATTGAAAAATCATTTGTTGAAAGGAAAGAACAAAAAATGCTTAGATTCTATAGTTCTCGTTTTGCAACGAGGAAGTAACAATTCGAGAATCGCAATCGCTAGGATTTTGAAATTCATCGCTATAGACGCTGAATCAGAGCTTCTAATCGTAGCGATTTCAAAGCCGAAACGGAACAAGATGAAGCTGGTGAAAATTGGAGTAATGAAGATTTTATCGAAATTATTAACGGAATCGAATATAAGTGTAGCGGTTGTGGAAAAGGCGTTGAAGTTAGTTGAAACGGCGTCGTCGACGAGTGAAGGAAGAAAAGAGATTTGTGAAGATAGCGTTTGTGTGGCGGCGATATTGAATAAAGTTTTGAAGGTATCGAATGTTGCGACGGAACACGGCGTAACGACGCTGTGGAGtgtttgttatttgtttcgCGATCAGAAAGCACAAGAAGCGGTTACGTTAGCGAATGGATTAACGAAGATTTTGTTGCTAATACAGAGTAATTGTTCACCACATGTTCGACAAATGTGTATGGATTTGCTTAAGATTTTTCGGGTTAATTCTAAATCATGTCTTTCAAGTTATGATACTAAGACTTCTCATATTATGCCATTTTGA 1152 0.3898 MVRENKLHDLCITVPTFFKCPISLDVMKSPVSLCTGITYDRSSIQRWLDDGNNTCPATMQTLYSKDIIPNRTLHSLIQIWTDSVHHRVNPPVSPSKEQVLQAITELTDSNGLNRFGLNLITKVNRFAQDSDQNKAFLAKLDGFVALMVSLLDNVDGSVEFLEQILTALSFVLEKIEDREALKNHLLKGKNKKCLDSIVLVLQRGSNNSRIAIARILKFIAIDAESELLIVAISKPKRNKMKLVKIGVMKILSKLLTESNISVAVVEKALKLVETASSTSEGRKEICEDSVCVAAILNKVLKVSNVATEHGVTTLWSVCYLFRDQKAQEAVTLANGLTKILLLIQSNCSPHVRQMCMDLLKIFRVNSKSCLSSYDTKTSHIMPF 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01342 383 SUPERFAMILY RING/U-box 5 83 - -
Tsu07g01342 383 Pfam U-box domain 14 82 IPR003613 GO:0004842|GO:0016567
Tsu07g01342 383 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Tsu07g01342 383 Gene3D - 88 375 IPR011989 -
Tsu07g01342 383 SUPERFAMILY ARM repeat 118 365 IPR016024 -
Tsu07g01342 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Tsu07g01342 383 CDD RING-Ubox_PUB 18 60 IPR045210 -
Tsu07g01342 383 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 8 230 - -
Tsu07g01342 383 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 229 383 - -
Tsu07g01342 383 PANTHER WDSAM1 PROTEIN 8 230 IPR045185 GO:0061630
Tsu07g01342 383 PANTHER WDSAM1 PROTEIN 229 383 IPR045185 GO:0061630
Tsu07g01342 383 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01342 Tsu-Chr7 11801361 11802602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01342 13 383 U-box Gene Family AT5G09800 48.411 1.11e-124 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01342 - - gmx:100799627 484.182