Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01341 ATGGCTACCGCCGCAGACTCATCCCGTCAACTCTCTCAAAAGGAAGCTGACATCCAGATGATGTTGGCTGCCGATGTTCATCTCGGCACCAAGAACTGTGACTACCAAATGGAGCGTTACATTTTCAAACGCCGCAATGACGgtatttatattattaatctCGGAAAGACATGGGAGAAACTTCAACTAGCTGCTAGGGTTATTGTTGCCATTGAGAACTCTAAGGACATCATTGTCCAATCTGCTAGGCCTTATGGTCAGAGAGCTGTTCTCAAGTTTGCTCAGCACACTGGTGCTAATGCCATTGCTGGAAGGCACACTCCTGGAACATTCACCAATCAGCTTCAGACTTCTTTCAGTGAGCCCCGTCTTCTTATCCTCACTGATCCAAGAACTGATCACCAGCCCATCAAGGAAGCTGCTCTTGGAAATATTCCCACTATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCTGCTAACAACAAGGGAAAACATAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTAGTATTCGCCCTGGTCTTAAATGGGATGTCATGGTTGATCTCTTTTTCTATAGAGAACCAGAGGAGGCCAAGGAGCAAGAGGAGGAGGATGTTGCTGCTCCAGATTATGCCATTGCTGACTTCAATGCAGCTGGTCCATCTGATGCTCAGTGGCCTGCTACCATTGATTCTTCATGGACTGATGCTGTCCCACAACCTATTCCAGCAGTTCCTGCTGCCAACTGGGCAGGTCAAGAAACTGTTGCAGGGGAATGGGGTGAAGCTGTACCACCTCCACAACAAATTCCCATTGCCGGAATTGAATCAGTGCCAGCAACCGGCTGGGAATAA 900 0.4689 MATAADSSRQLSQKEADIQMMLAADVHLGTKNCDYQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENSKDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGSIRPGLKWDVMVDLFFYREPEEAKEQEEEDVAAPDYAIADFNAAGPSDAQWPATIDSSWTDAVPQPIPAVPAANWAGQETVAGEWGEAVPPPQQIPIAGIESVPATGWE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01341 299 Hamap 40S ribosomal protein SA [rps-0]. 5 268 IPR027498 GO:0003735|GO:0006412|GO:0015935
Tsu07g01341 299 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01341 299 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01341 299 PANTHER 40S RIBOSOMAL PROTEIN SA 1 289 - -
Tsu07g01341 299 MobiDBLite consensus disorder prediction 276 299 - -
Tsu07g01341 299 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01341 299 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01341 299 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01341 299 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01341 299 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01341 299 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01341 299 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01341 299 PANTHER 40S RIBOSOMAL PROTEIN SA 1 289 IPR005707 GO:0003735|GO:0006412|GO:0015935
Tsu07g01341 299 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Tsu07g01341 299 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Tsu07g01341 299 Gene3D - 17 223 - -
Tsu07g01341 299 TIGRFAM uS2_euk_arch: ribosomal protein uS2 13 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01341 Tsu-Chr7 11776291 11778428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01341 5 299 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.864 1.84e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01341 K02998 - gmx:100805318 504.982