Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01340 ATGGCTTCGGAAACCCCGTCCCCTTCATCTCCAAAGCTTGTCTACTTAATCCGCGGTACACATGCACCACACGACATCCAGAAGAAGCTGCATCAAAAGAAACACAACTCAGCAGATCAGATAATAGCAAGGGCAAGATGCGTGGTGGTTGAAAAAGAGGATTACAGTAATACCACGTGTGAGCATTGTGGCTCCGGTGACAACCCAGAGGAGCTAATGCTCTGTGAAAAATGCGACAATGGGTTTCACATGAAATGTGTGAGACCAATTGTTGTGAGAATTCCGATTGGGTCATGGATTTGCCCCAACTGTTCATgcacaaagaaagaaacaaAGTTCactaaaaagaaaattctagATTTTTTTGGGATTGGAATGGTGGATTTCAGAATGAATGTTTCTTCTCCTCATGAAGCTAAGAGGCATCGGAGACGTTCAAAACCTCTTGTGTTacagaagaaaagaagaagactTTTACCATTTGTTCCTACAACTGATCTTAGTAGGAGACTAACACAAATGGCTTCTCTTGCTTCTGCTTTAACATCTTTGAATATAGAGTTCTGTAATCACCTCACATACTTTTCAGGAATGGCTCCTAGATCTGCTAATCAATCATCTTTAGAAAACGGTGGCATGCAGACTCTTACTAAGGAAGATGGGGAGATTATAGAACATTGTACAACAATGATCAAACGAGGTGAATTTCCTCCGTTGATGGTCGTTTATGATTCATGTCAAGGCTATACTTTGGAGGCTGATGATCCAATCAAAGACATGACATTTATTGCAGAATACACGGGAGATGTTGATTATCTAAAGAAAAGAGAATTTGATGACTGCGATAGTATGATGACATTACTTCTTGCAGAAGAATGTGCTTCTAGTCTTGTTATTTGTGCTGATAAACGCGCAAACATTGCTCGCTTTATCAGTGGCATCAACAATCATACCCCGGAAGGTAAGAAGAAACAAAACTCCAAATTTGTCAGATACGCCGTTGATGGAGAATGTCGGGTATTTTTGGTTGCTATCCGGAATATTTTCGAAGGGGAAAAATTGTACTGTAATTACAATGGTCACGAGAATAAATACCCAACTGATAATTTTGTCTGA 1116 0.3844 MASETPSPSSPKLVYLIRGTHAPHDIQKKLHQKKHNSADQIIARARCVVVEKEDYSNTTCEHCGSGDNPEELMLCEKCDNGFHMKCVRPIVVRIPIGSWICPNCSCTKKETKFTKKKILDFFGIGMVDFRMNVSSPHEAKRHRRRSKPLVLQKKRRRLLPFVPTTDLSRRLTQMASLASALTSLNIEFCNHLTYFSGMAPRSANQSSLENGGMQTLTKEDGEIIEHCTTMIKRGEFPPLMVVYDSCQGYTLEADDPIKDMTFIAEYTGDVDYLKKREFDDCDSMMTLLLAEECASSLVICADKRANIARFISGINNHTPEGKKKQNSKFVRYAVDGECRVFLVAIRNIFEGEKLYCNYNGHENKYPTDNFV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01340 371 ProSitePatterns Zinc finger PHD-type signature. 60 104 IPR019786 -
Tsu07g01340 371 Pfam PHD-finger 60 106 IPR019787 -
Tsu07g01340 371 Gene3D SET domain 143 371 IPR046341 -
Tsu07g01340 371 SUPERFAMILY SET domain 206 361 IPR046341 -
Tsu07g01340 371 SMART PHD_3 59 105 IPR001965 -
Tsu07g01340 371 ProSiteProfiles SET domain profile. 237 359 IPR001214 GO:0005515
Tsu07g01340 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 119 IPR013083 -
Tsu07g01340 371 CDD SET_ATXR5_6-like 234 371 - -
Tsu07g01340 371 ProSiteProfiles Zinc finger PHD-type profile. 57 107 IPR019787 -
Tsu07g01340 371 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 27 369 - -
Tsu07g01340 371 SUPERFAMILY FYVE/PHD zinc finger 51 115 IPR011011 -
Tsu07g01340 371 PANTHER HISTONE ACETYLTRANSFERASE 27 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01340 Tsu-Chr7 11758429 11761084 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01340 57 142 C2H2 Transcription Factor Family AT3G01460 29.670 4.51e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu07g01340 PHD 3.8e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01340 K24406 - gmx:100785817 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01340 07 11758429 11761084 Tsu07g01340 07 11758429 11761084 ECH