Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01338 ATGGCTCCGGAAACCTCATCGCCTTCATCTTCGAAGCTAGCGAGCTTCATCCACCGTACGCATACACCGCACGGCCTCAAGAAGTTGCGACCGAAGAAGTACAGGACAATGACTGATATAATGGCAAGGGCAAGGTACGCGGTGGTGGAAAAAGAGGATTACGGTGGCATCATTTGTGAGCAATGTGGCTCCGGTGACAACTCGGAGGAGCTGCTGCTGTGCGACAAATGTGACAATGGTTTTCATATGAAATGTGTGAGACCAATTGTTGTCAGAATTCCGATTGGTACGTGGATTTGCCCCAAGTGTTCAGGGACGAAGAAAGTGACAAAGTTCTCTCAAAggaaaattttagattttttcggGATTCGAAGGGTGGATTTCAAAATGAATCTTTCTTCTCCCGAGGATGTTAGGAGGCGTCGGAGACGTCCAAGACCTCTGGTGGTACAGAAGAAAAGCAGAAGACTTTTACCATTTGTTCCTACAAAAGATCCTGATAGGAGACTGAAACAAATGGCTTCCCTTGCTTCCGCTTTAAAAGCATTAAATATGGAATTCAGTAATCACTTGACGTACTTTCCAGGAATGGCTCCCGAATCTGCAAATCAATCCATTTTAGAAAACGGTGGCATGCAGGGTCTTACAAAGGAAGATGGGGAGACCTTAGAACGCTGCATAGCTATGACTAAGCAAGGCAAATTCCCTCCCTTAATGGTCGTTTATGATTCATGTCAAGGCTATACTGTGGAGGCTGATGGTCTAATAAAAGATATGACATTTATTGCTGAATACACTGGCGATGTGGATTATTTAAAGAAAAGGGAATCTGATGATTGCGATAGTATGATGACGTTGCTTCTTGCAGCAGAAAGTGCTAACAGTCTTGTTATTTGTGCTGATAAACGCGGAAACATTGCTCGCTTTATCAGTGGCATCAACAATCATACTCCGGAAGGTAAGAAGAAGCAAAACTGCAAATGTTTGAGATACAACGTTGATGGTGAATCCCGGGTCTTTTTGGTTGCTACTCGAGATATTTCCGAGGGGGAGAGGCTATATTATGATTATAATGGTTATGAGAATCAATACCCAACTCATCATTTTGTCTGA 1113 0.4277 MAPETSSPSSSKLASFIHRTHTPHGLKKLRPKKYRTMTDIMARARYAVVEKEDYGGIICEQCGSGDNSEELLLCDKCDNGFHMKCVRPIVVRIPIGTWICPKCSGTKKVTKFSQRKILDFFGIRRVDFKMNLSSPEDVRRRRRRPRPLVVQKKSRRLLPFVPTKDPDRRLKQMASLASALKALNMEFSNHLTYFPGMAPESANQSILENGGMQGLTKEDGETLERCIAMTKQGKFPPLMVVYDSCQGYTVEADGLIKDMTFIAEYTGDVDYLKKRESDDCDSMMTLLLAAESANSLVICADKRGNIARFISGINNHTPEGKKKQNCKCLRYNVDGESRVFLVATRDISEGERLYYDYNGYENQYPTHHFV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01338 370 SUPERFAMILY FYVE/PHD zinc finger 50 109 IPR011011 -
Tsu07g01338 370 SMART PHD_3 58 104 IPR001965 -
Tsu07g01338 370 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 20 368 - -
Tsu07g01338 370 ProSitePatterns Zinc finger PHD-type signature. 59 103 IPR019786 -
Tsu07g01338 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 117 IPR013083 -
Tsu07g01338 370 CDD SET_ATXR5_6-like 233 370 - -
Tsu07g01338 370 Gene3D SET domain 141 370 IPR046341 -
Tsu07g01338 370 ProSiteProfiles Zinc finger PHD-type profile. 56 106 IPR019787 -
Tsu07g01338 370 SUPERFAMILY SET domain 225 358 IPR046341 -
Tsu07g01338 370 CDD PHD_RSF1 59 103 - -
Tsu07g01338 370 ProSiteProfiles SET domain profile. 236 358 IPR001214 GO:0005515
Tsu07g01338 370 PANTHER HISTONE ACETYLTRANSFERASE 20 368 - -
Tsu07g01338 370 Pfam SET domain 287 358 IPR001214 GO:0005515
Tsu07g01338 370 Pfam PHD-finger 58 104 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01338 Tsu-Chr7 11746650 11750566 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01338 59 138 C2H2 Transcription Factor Family AT3G01460 32.099 5.58e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu07g01338 SET 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01338 K24406 - gmx:100785817 541.191