Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01335 ATGACTAATTtcagaaaacaaattaaacacaatTTCCCAATCTTCAGATCCACCTTCTTCCTCCTCACCATGGCAACAACAACCCTCTcattcctcttcctcttcttcttcctcctcctctCCACCCCCCACACTACTCACTCCACCCACATCCACCGCATCAACCAAGCTTGCAAAGCCACACGTTTCCCTCTCCAATGTCAAACCACCCTAATCTCACACTCCCTCCACCTCCCCTTCAACCCTACCCCTCTTCACATCATCAATTCCTCAATTTCACTCTCTTCACGTAACCTAAAAATCGCTAATTCAATGCTCGACTCCATCCTACAAGCTTTCGCAGGTGATCATGGCCGTATCGCAATCGCTAAAGGCTGTCTTCAAGTTTTTCAATACTCTCATCACCGTACTTCTTTAACCGTTGAAGCACTCTCACGTGGTAGAATCAAAGACGCACGTGCTTTCATGAGTGCTGCATTGGCTTATCAGTATAATTGTTGGTCTGGTCTTAAATATGCTAATGATACTGAATTAGTTTTCAAAACGATGTCGTTTCTTGATTCTCTTACCATCATTTCTAGTAATGCTCTTAGTATGATTGTTTCGTATGATTTGTTTGGTAATGATACTGATTTATGGAGGCCGCCGAGGACCGAACGGGATGGATTTTGGGAGGATTCCGGTTCGGGTGTGTTTGGGCCAGGGCCGTCTTTACCGGCGAATCTTATGCAGGATGTTACCGTGTGTAAGGAGACGGGTGGTGGGTGTTATGGGACGGTGCAGGAAGCGGTTGATGCCGCGCCTGATAATGTGGATGTTGGTGGAGGGAAATTTGTGATACATATAAAGGAAGGGGTTTATGAAGAGAGGGTTAGGGTTCCGTTAAGGAAGAAGAATGTTGTGTTTTTGGGTGATGGGATTGGTAAGACTGTCATCACTGGCTCTGCTAGTGTCGGATTAACGGTGGGGATGACAACCTATAACTCTGCCACAGTAGGAGTTGCTGGGGATGGATTCATGGCAAAGGATCTGACATTTGAAAACACGGCAGGTGCTAATGCACACCAAGCAGTAGCATTCAGATCAGACAGTGATTTTTCTGTTATTGAGAATTGTGAATTCATAGGCAACCAAGATACTCTCTATGCTCAATCCATGCGTCAGTTTTATAAATCTTGCCGTATTATAGGCAATGTGGATTTCATCTTTGGAAACTCGGCTTCGTTCTTCCAAGACTGCAAAATCCTAGTCCAGCCCAGGCAAGCAAGGCCAAGGAAAGGGGAGAACAATGCCATTACTGCACATGGCAGAACAGATCCTGCTCAGTCTACCGGTTTTGTTTTCCACAACTGCTTGATTAATGGTACTGAGAAATATATGGAATTGTATTATGACAAGCCTAATGTACACAAGAACTATCTCGGAAGGCCATGGAAAGAGTATTCTAGAACAGTTTTCATTAATTCGTTCTTGGAAACCTTAATCACGCCAGAGGGTTGGTTGCCATGGAGTGGAGATGTTGGACTGAATACACTCTACTACGGGGAATTCGACAACTCTGGACCTGGTTCTAATTTGACCAAGAGAGTGTCCTGGAGTAGTCAGGTTCCTGCTGAACACGTGTCCACTTATTCTGTACAGGGTTTCATTCAAGGAGATGATTGGGTTCATCGTAGCAGTTATTAG 1686 0.4342 MTNFRKQIKHNFPIFRSTFFLLTMATTTLSFLFLFFFLLLSTPHTTHSTHIHRINQACKATRFPLQCQTTLISHSLHLPFNPTPLHIINSSISLSSRNLKIANSMLDSILQAFAGDHGRIAIAKGCLQVFQYSHHRTSLTVEALSRGRIKDARAFMSAALAYQYNCWSGLKYANDTELVFKTMSFLDSLTIISSNALSMIVSYDLFGNDTDLWRPPRTERDGFWEDSGSGVFGPGPSLPANLMQDVTVCKETGGGCYGTVQEAVDAAPDNVDVGGGKFVIHIKEGVYEERVRVPLRKKNVVFLGDGIGKTVITGSASVGLTVGMTTYNSATVGVAGDGFMAKDLTFENTAGANAHQAVAFRSDSDFSVIENCEFIGNQDTLYAQSMRQFYKSCRIIGNVDFIFGNSASFFQDCKILVQPRQARPRKGENNAITAHGRTDPAQSTGFVFHNCLINGTEKYMELYYDKPNVHKNYLGRPWKEYSRTVFINSFLETLITPEGWLPWSGDVGLNTLYYGEFDNSGPGSNLTKRVSWSSQVPAEHVSTYSVQGFIQGDDWVHRSSY 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01335 561 Pfam Plant invertase/pectin methylesterase inhibitor 54 199 IPR006501 GO:0004857
Tsu07g01335 561 PANTHER PECTINESTERASE 40 558 - -
Tsu07g01335 561 Pfam Pectinesterase 245 553 IPR000070 GO:0030599|GO:0042545
Tsu07g01335 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 200 IPR035513 -
Tsu07g01335 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 202 IPR035513 -
Tsu07g01335 561 CDD PMEI-like_3 57 200 - -
Tsu07g01335 561 Gene3D - 240 561 IPR012334 -
Tsu07g01335 561 SMART PMEI_2 49 199 IPR006501 GO:0004857
Tsu07g01335 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 29 198 IPR006501 GO:0004857
Tsu07g01335 561 SUPERFAMILY Pectin lyase-like 246 557 IPR011050 -
Tsu07g01335 561 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 40 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01335 Tsu-Chr7 11711763 11714207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01335 41 560 Carbohydrate Esterase AT5G09760 62.429 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01335 - - gmx:100802102 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01335 07 11711763 11714207 Tsu07g01335 07 11711763 11714207 ECH
Tsu02g00670 02 5686476 5689099 Tsu07g01335 07 11711763 11714207 PCT