Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01334 ATGAGTGGAACTGGCAGAAAGCGCTCTTCAAAGTGGGATTTGAGTGATGAACACAAGCAAATGCGATCTGGGTGGTCCTCTGCAGATGTTGCTGGTAACAATAGTTCAAAATGGGCTTATTCGGAAGGAAATGATAAATTAAGACCTGTTATGGGATATTCATCAAAAGAATCTTTTTCTGGAGGCAGAGGTTCATATGAGGATGATGCTATGAATGAAGACCATAGAATTTCGGATACAAGAAGAGAATGGGACACTGATGGAAGTTACAGCAAGAAAATGTCTTCTTGGCAAGAGGAATGGGAACAAAAGAGGCACAGTCAATCTCCTATAAATGGTTGGAACAGGAGCAGTCGGAGCCGCAGTCAGAGCAGGAGCCCTCCTCGTGGTTTTAGGCGGGATTCAGGTGTTGATGATAGAAAAAGGATGAGGGTTGTAGGATCAACACGACCGTGCAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGTCTTTGCAATTTTCTGCATCATGATAACCAAAGTCGTGAGAATAGTTGGGAGGGTAAGCACAGAGAAGATAGAGCTCCCAGATACTCTGCTACCCATGAGAGAGGTGACCATTCTCTTAAGAGTGGTAGATCTAATGAAGCTTGTATAAATTTTGCAAAAGGCAGTTGTAGAATGGGAGCATCTTGCAAGTTTATGCATGATAACGATTCTGATGGATATGGTAAAGTTTCTATGGATGAATTCACTAGAGAAAGGGAAGATAGAGCTCCCAGATATCCTGCTACCCATGAGGGCGGGGACCATTCTCTTAAGAGGGGCAGATCTAATGAAACTTGCACAAATTTTGCAAAAGGCAGGTGTAGAATGGGAACATCTTGCAAGTTTGTGCATGATAACGATTCTGATGGATATGGCAAAGATTTTATGGATGAATTCCCTAGAGAAAGGGAAATTGACAGAAGGCACAGAGATAATTCTTTTGAGCAGGGTGGCCGGTATGTGCCTAATCGCACTAGTGATACTCCTTGCAAATTTTTTGCCAGTGGAAATTGTCGAAATGGTAAATTTTGTAAGTTTTCTCACGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGGGATGATAGATGGGCAAGAAATCCAGGTAGAGATCATCAAATGTTGGATAGACAAAAATTGAGTGATTCCATTAGTCCAAATAGAAGGCTAAGAGATGATAGATGGGGTTCGGATGGCGATGTGGCTGATCCAGATAGAGTTGGGGACAGTCCAAAGCGAAATAATACAGTTTCTGTCTCTGATACAGCAAAGCTGATTGAGAATAAAAGTGGAAATATAGATGCCACAGAGCCAGGATTTACTACTTTATCGGATGGATTTGGGCATGAGTTAGATAAGAGCGGGCTGCATGGTAAACCACCAATTTCGAGTGATACGAAGGAAGCTGATTGTTGGATAGAAGAAAATACCGGTCCCAACACGCATGTATCCCATTCAGTAGTCACAACAGACATTTGGCCGGGTGATGCAGAAATGTCTCCTGATTGGAATTATAAGACGGGATCTTCCAGCCATGTGGAAGAACCTGGACAGAATAAGCATGGTATAAGGCAGGGTGGTACGTATTTACCCATCTCAGAACCCGACAGAGTACAACTTGCTCCAGGACAAAGCATCAATCAGAATGCACAGAATGTAAATCCTTTGCATACTTCCAGCTGCCATGCAGTTGGACAAAGTCAACTGGATGTTCCCATTCTTCCTTCAAGTGGAGGAATTGTTGATGCTATGCACAGACAAGAAGTATCTAATGAGAAAAAGTACATTGTGGAACCAAATATCACAGATTCAGGCTTATCACAAGTTAGCTCAATAAATCCTCCAACACAAAACGCCGTAAGCAATGAACAGCTTGCTCAACTCACGACCTCTCTGGCTCATATCCTAGGAGCAGGTCAGCAGCTGCCGCAGCTATATGCTGCTTTAAATTCTCACGATTTAAAGGACAGTCCTTCCCAAGGAAAAACTCAAGCGCCTGCAATGCCTGTTTCAATCACATGCATCAAGCCTGATCCTGCCGTTGGACTCCCAAAGCAGTATGGTCCTGTGAATGATAGTATTGAGCAAACAAATGCTGATGCAAGTGGTGTGTCCCCAGCCATTCCTCCAAGTAAAAATATTGCTGAAGTGGAAATTCTGTCACAGTTGTCTAACCCTGGAAGACAAAATTGTGGTGATTCTATTAAGGGTGCCTCCTCAGAACTTGTCAAGACTGATAATCTAATCCATTTGCAGCCTGGTCAAAATACAGTGGTGAATAAGGACAACAATGAAGAGGTAGCTAAGGAAAGGAAACATTCTGAAGATGGTCATAAAAGTACAAAAGAGAATGGTCCACAAAACACGGACCAAAATGGTAGGCCTGATGATGCAAAGCAAACAAAGGAGATGAAAGGGATTCGGACATTTAAATTTGCATTGGCTGAGGTTGTTAAGGAGCTTCTGAAACCAGCATGGAAAGAAGGTCAAATAACTAATAAAGAAGATTATAAAACCATTGTGAAGAAAGTTCTTGATAAAGTAACGGCTACCATGCAGGGGCCCAATATTCCTCAGACACAAGAGAAAATTGACCAATATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGgCATATGTGGAAAAGGTTCAGAAGCCTCAGTGA 2706 0.4224 MSGTGRKRSSKWDLSDEHKQMRSGWSSADVAGNNSSKWAYSEGNDKLRPVMGYSSKESFSGGRGSYEDDAMNEDHRISDTRREWDTDGSYSKKMSSWQEEWEQKRHSQSPINGWNRSSRSRSQSRSPPRGFRRDSGVDDRKRMRVVGSTRPCRDFAAGKCRRGSLCNFLHHDNQSRENSWEGKHREDRAPRYSATHERGDHSLKSGRSNEACINFAKGSCRMGASCKFMHDNDSDGYGKVSMDEFTREREDRAPRYPATHEGGDHSLKRGRSNETCTNFAKGRCRMGTSCKFVHDNDSDGYGKDFMDEFPREREIDRRHRDNSFEQGGRYVPNRTSDTPCKFFASGNCRNGKFCKFSHDRQACRSPNRRLRDDRWARNPGRDHQMLDRQKLSDSISPNRRLRDDRWGSDGDVADPDRVGDSPKRNNTVSVSDTAKLIENKSGNIDATEPGFTTLSDGFGHELDKSGLHGKPPISSDTKEADCWIEENTGPNTHVSHSVVTTDIWPGDAEMSPDWNYKTGSSSHVEEPGQNKHGIRQGGTYLPISEPDRVQLAPGQSINQNAQNVNPLHTSSCHAVGQSQLDVPILPSSGGIVDAMHRQEVSNEKKYIVEPNITDSGLSQVSSINPPTQNAVSNEQLAQLTTSLAHILGAGQQLPQLYAALNSHDLKDSPSQGKTQAPAMPVSITCIKPDPAVGLPKQYGPVNDSIEQTNADASGVSPAIPPSKNIAEVEILSQLSNPGRQNCGDSIKGASSELVKTDNLIHLQPGQNTVVNKDNNEEVAKERKHSEDGHKSTKENGPQNTDQNGRPDDAKQTKEMKGIRTFKFALAEVVKELLKPAWKEGQITNKEDYKTIVKKVLDKVTATMQGPNIPQTQEKIDQYLSFSKPKLNKLVQAYVEKVQKPQ 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01334 901 Pfam RNA-binding, Nab2-type zinc finger 339 358 - -
Tsu07g01334 901 Pfam RNA-binding, Nab2-type zinc finger 276 294 - -
Tsu07g01334 901 MobiDBLite consensus disorder prediction 26 41 - -
Tsu07g01334 901 MobiDBLite consensus disorder prediction 365 432 - -
Tsu07g01334 901 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 247 898 - -
Tsu07g01334 901 MobiDBLite consensus disorder prediction 107 125 - -
Tsu07g01334 901 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 247 898 - -
Tsu07g01334 901 Gene3D - 333 404 - -
Tsu07g01334 901 MobiDBLite consensus disorder prediction 774 794 - -
Tsu07g01334 901 MobiDBLite consensus disorder prediction 127 143 - -
Tsu07g01334 901 ProSiteProfiles Zinc finger C3H1-type profile. 334 361 IPR000571 GO:0046872
Tsu07g01334 901 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 210 231 IPR000571 GO:0046872
Tsu07g01334 901 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 171 IPR000571 GO:0046872
Tsu07g01334 901 MobiDBLite consensus disorder prediction 761 813 - -
Tsu07g01334 901 MobiDBLite consensus disorder prediction 174 205 - -
Tsu07g01334 901 SUPERFAMILY CCCH zinc finger 336 359 IPR036855 GO:0046872
Tsu07g01334 901 MobiDBLite consensus disorder prediction 67 89 - -
Tsu07g01334 901 SMART c3hfinal6 271 296 IPR000571 GO:0046872
Tsu07g01334 901 SMART c3hfinal6 148 172 IPR000571 GO:0046872
Tsu07g01334 901 SMART c3hfinal6 207 232 IPR000571 GO:0046872
Tsu07g01334 901 SMART c3hfinal6 334 360 IPR000571 GO:0046872
Tsu07g01334 901 MobiDBLite consensus disorder prediction 1 89 - -
Tsu07g01334 901 MobiDBLite consensus disorder prediction 9 23 - -
Tsu07g01334 901 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 250 - -
Tsu07g01334 901 MobiDBLite consensus disorder prediction 101 143 - -
Tsu07g01334 901 Gene3D - 197 260 - -
Tsu07g01334 901 Gene3D - 138 196 - -
Tsu07g01334 901 Gene3D - 261 329 - -
Tsu07g01334 901 MobiDBLite consensus disorder prediction 365 421 - -
Tsu07g01334 901 ProSiteProfiles Zinc finger C3H1-type profile. 147 173 IPR000571 GO:0046872
Tsu07g01334 901 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 250 - -
Tsu07g01334 901 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Tsu07g01334 901 ProSiteProfiles Zinc finger C3H1-type profile. 206 233 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01334 Tsu-Chr7 11676442 11685589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01334 157 294 C2H2 Transcription Factor Family AT3G02830 28.873 6.29e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu07g01334 zf-CCCH 0.00033 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01334 - K22909 gmx:100783856 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01334 07 11676442 11685589 Tsu07g01334 07 11676442 11685589 ECH
Tsu07g01334 07 11676442 11685589 Tsu02g00669 02 5673540 5681686 ECH