Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01330 ATGGCTACCGAGAACTCTTCCCGTCAACTCTCTCAAAAGGAAGCTGACATCCAGATGATGTTGGCTGCCGATGTTCATCTCGGCACCAAGAACTGTGACTACCAAATGGAGCGTTACATTTTCAAACGCCGCAATGATGgtatttatattattaatctCGGAAAGACATGGGAGAAACTTCAACTAGCTGCTAGGGTTATTGTTGCCATTGAGAACTCTAAGGACATCATTGTCCAATCTGCTAGGCCTTATGGTCAGAGAGCTGTTCTCAAGTTTGCTCAGCACACTGGTGCTAATGCCATTGCTGGAAGGCACACTCCCGGAACATTCACCAATCAGCTTCAGACTTCTTTCAGTGAGCCCCGTCTTCTTATCCTCACAGATCCAAGAACTGATCACCAGCCCATCAAGGAAGCTGCTCTTGGAAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCTGCTAACAACAAGGGAAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTAGTATTCGCCCTGGTCTTAAGTGGGATGTCATGGTTGATCTCTTCTTCTATAGAGAACCAGAGGAGGCCAAGGAGCAAGAGGAGGATGATGTTGCTGCTCCAGATTATGCCATTGCTGACTTCAATGCAGCTGTTCCATCTGATGCTCAGTGGCCTGCTACCATTGATCCTTCATGGACTGATGCTGTCCCACAACCTATTTCAGCAGCTCCTGCTGTCAACTGGTCTGCCCCAGAAGCTGTTGCAGGAGGGGACTGGGGTGAAGCTGTTCCACCACCACAAATACCTGCTCCTGGAGTTGAATCCATTCAGGCAACTGGCTGGGAATAA 897 0.4705 MATENSSRQLSQKEADIQMMLAADVHLGTKNCDYQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENSKDIIVQSARPYGQRAVLKFAQHTGANAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGSIRPGLKWDVMVDLFFYREPEEAKEQEEDDVAAPDYAIADFNAAVPSDAQWPATIDPSWTDAVPQPISAAPAVNWSAPEAVAGGDWGEAVPPPQIPAPGVESIQATGWE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01330 298 CDD RPS2 20 186 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01330 298 Pfam Ribosomal protein S2 20 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01330 298 Pfam Ribosomal protein S2 119 184 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01330 298 PRINTS Ribosomal protein S2 signature 47 56 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01330 298 PRINTS Ribosomal protein S2 signature 17 35 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01330 298 PRINTS Ribosomal protein S2 signature 121 138 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01330 298 PRINTS Ribosomal protein S2 signature 96 113 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01330 298 PRINTS Ribosomal protein S2 signature 159 173 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01330 298 PRINTS Ribosomal protein S2 signature 138 149 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tsu07g01330 298 Hamap 40S ribosomal protein SA [rps-0]. 4 278 IPR027498 GO:0003735|GO:0006412|GO:0015935
Tsu07g01330 298 ProSitePatterns Ribosomal protein S2 signature 2. 121 145 IPR018130 GO:0003735|GO:0005840|GO:0006412
Tsu07g01330 298 Gene3D - 16 221 - -
Tsu07g01330 298 PANTHER 40S RIBOSOMAL PROTEIN SA 8 288 - -
Tsu07g01330 298 MobiDBLite consensus disorder prediction 269 298 - -
Tsu07g01330 298 SUPERFAMILY Ribosomal protein S2 12 202 IPR023591 -
Tsu07g01330 298 PANTHER 40S RIBOSOMAL PROTEIN SA 8 288 IPR005707 GO:0003735|GO:0006412|GO:0015935
Tsu07g01330 298 TIGRFAM uS2_euk_arch: ribosomal protein uS2 12 208 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01330 Tsu-Chr7 11646373 11648789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01330 5 273 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 76.259 2.29e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01330 K02998 - gmx:100805318 517.309