Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01303 ATGAACGAAGCTCAAACAGAAATCAACATTCCTCACTTGTTTAGATGTCCTATAAGTCTTGATTTGTTAGAAGATCCAGTGACTTTAATCACTGGTCAAACCTATGATAGATCAAGCATAGAAAAATGGATTTCTGCAGATTATTCAACAACAGTTTCACAAACAGAAGATTTATGTCATGTACTTGGAAATTCACAAAAACTAGTACATGAAATTGTTCAAGTTGTTATTAATCAAAATAGTGATGATGACGACGACGACGAGGTTTCTATGGCAGCAATTAAGGCCTTATCAGCATTATCTTCATTGGAATCAAACAAAGAGAGTTTAGTGAAAAGTGGAGCAATAAATGGAATCATAAGATACATTTCAAGATGTGAAAATGGACAGAAGATTAATTTGGCACCACTAGCAATGGCAACATTGAAGAAACTGTTGGTTTTGGAGAGTGGTAAAGAAGCATTGGTGAATCATGTAAATGGTATTGAAACATTGGTTAAGATGGTTTTTAAGGTATGTAATCAAGAGTGTAGTGAAAGTGCTGTTGGAATACTTTCAATTATTTGTAGTGATTTTGGAAGTGCTAGAGAAGTAGCTATTGGAGCTGGTGTTTTGAGTCAGTTATTGTTTCTTTTGCAGAGTCAATGTGgtactaaaactaaaactaaggCAAGAATGTTGCTTAAGTTGTTGAGATCTAAGTGGAGTGAAGAATCAATGTAG 723 0.3347 MNEAQTEINIPHLFRCPISLDLLEDPVTLITGQTYDRSSIEKWISADYSTTVSQTEDLCHVLGNSQKLVHEIVQVVINQNSDDDDDDEVSMAAIKALSALSSLESNKESLVKSGAINGIIRYISRCENGQKINLAPLAMATLKKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVGILSIICSDFGSAREVAIGAGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWSEESM 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01303 240 ProSiteProfiles U-box domain profile. 9 92 IPR003613 GO:0004842|GO:0016567
Tsu07g01303 240 PANTHER WDSAM1 PROTEIN 50 234 IPR045185 GO:0061630
Tsu07g01303 240 PANTHER WDSAM1 PROTEIN 9 47 IPR045185 GO:0061630
Tsu07g01303 240 CDD RING-Ubox_PUB 14 50 IPR045210 -
Tsu07g01303 240 Gene3D - 63 233 IPR011989 -
Tsu07g01303 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 62 IPR013083 -
Tsu07g01303 240 PANTHER OS02G0542800 PROTEIN 50 234 - -
Tsu07g01303 240 SUPERFAMILY ARM repeat 68 231 IPR016024 -
Tsu07g01303 240 Pfam U-box domain 10 46 IPR003613 GO:0004842|GO:0016567
Tsu07g01303 240 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 71 115 IPR000225 GO:0005515
Tsu07g01303 240 PANTHER OS02G0542800 PROTEIN 9 47 - -
Tsu07g01303 240 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Tsu07g01303 240 SUPERFAMILY RING/U-box 5 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01303 Tsu-Chr7 11437332 11438570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01303 8 56 U-box Gene Family AT3G19380 61.224 1.05e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01303 - - mtr:MTR_3g096370 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01303 07 11437332 11438570 Tsu07g01303 07 11437332 11438570 ECH