Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01260 ATGGCTGACGTCAACCGCTCCAACAAACCAGAGTGGCTTCAACAGTACGATCTCATCGGTAAGATCGGTGAAGGAACCTACGGTCTCGTCTTCCTTGCGAGGATCAAATCCGCAACAAACCGCGGCAAATCCATCGCCATCAAGAAATTCAAACAATCTAAAGACGGCGATGGCGTCTCCCCCACCGCCATCCGTGAAATCATGTTGCTGAGGGAGATAACTCATGAAAATGTTGTGAAGCTTGTGAATGTTCACATCAATCACGCGGACATGTCTCTGTATTTGGCTTTTGATTATGCTGAACATGATCTTTATGAAATAATAAGACATCATAGAGACAAGGTCAACCAATCAATTAATCAGTACACTGTTAAGTCGATACTGTGGCAGTTGCTCAATGGGCTGAACTATCTGCACAGCAATTGGATAATACATCGAGATTTGAAGCCATCGAATATATTGGTTATGGGCGATGGGGAGGAACATGGGGTTGTTAAAGTTGCTGACTTTGGGCTTGCAAGGATATATCAAGCCCCTCTGAAGCCTTTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCTACACCAAATCCTTTTCAGCTTGATCAGCTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCACATCTTCCCCATTGGCAACAAGATTCGCTTCAAATACAAAGTCACAAATATGACAATGCCAATCTCTACAGTGTTGTACACCTATCTCCAAAAAGTCCTGCATATGACCTATTGTCAAAGATGCTTGAGTAA 927 0.4315 MADVNRSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSATNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSILWQLLNGLNYLHSNWIIHRDLKPSNILVMGDGEEHGVVKVADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLAHLPHWQQDSLQIQSHKYDNANLYSVVHLSPKSPAYDLLSKMLE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01260 308 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524
Tsu07g01260 308 PANTHER CELL DIVISION PROTEIN KINASE 5 308 - -
Tsu07g01260 308 Pfam Protein kinase domain 16 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g01260 308 SMART serkin_6 16 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g01260 308 PANTHER CYCLIN-DEPENDENT KINASE E-1 5 308 - -
Tsu07g01260 308 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Tsu07g01260 308 Gene3D Transferase(Phosphotransferase) domain 1 98 308 - -
Tsu07g01260 308 ProSiteProfiles Protein kinase domain profile. 16 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g01260 308 CDD STKc_CDK8_like 15 308 - -
Tsu07g01260 308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Tsu07g01260 308 SUPERFAMILY Protein kinase-like (PK-like) 11 307 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01260 Tsu-Chr7 10999913 11003960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01260 9 308 Core Cell Cycle Gene Families AT5G63610 85.000 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Tsu07g01260 Pkinase 2.1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01260 K02208 - gmx:100813433 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01260 07 10999913 11003960 Tsu07g01260 07 10999913 11003960 ECH