Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01247 ATGGCCGCGGAAATTTGTGGCGGGTCTCTATTCTTATCCGTTaaaactcaacaacaacaacaacggtTATTCCACCATTCTCAACAAAGATTCAACTCATCCAAACCTCGTTTCTCTTTTCACTCTTCAAATTCCTCCACCTTTCACCGCCGTGGCTCCTCCTCCGTTTTCTGCCGTGTTGCCAGCACTGACACACTCTCCGACTTCGACTCCACCGCTAGAGATGGACAGGATCGTCTCTCTAAGGTTCCGATTTCGAATATAAGGAATTTCTCCATTATTGCTCATATTGACCATGGGAAATCTACGTTAGCGGATAAATTGCTTCAGGTTACTGGTACTGTTCCTCAGCGAGAGATGAAGGAACAGTTTCTTGATAACATggatttagagagagaaagaggcATCACTATTAAGCTTCAGGCAGCTCGAATGCGTTATGTGTTTGAAAATAAACCATATTGTCTAAATTTAATAGATACTCCTGGACACGTCGACTTCTCGTACGAGGTTTCTCGATCACTTGCTGCATGTGAGGGTGCTCTCCTTGTAGTAGATGCTTCTCAGGGGGTTGAAGCGCAAACACTAGCTAATGTGTATTTAGCTTTGGATAATAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTTCCGGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGGTTATAGGTCTAGATTGTAGCAACGCCATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATGGATATTCTGAATGCAATTGTTGCAAGAATTCCCCCACCTCCTGATACATCAAAAAGGCCATTGAGGGCTTTAATATTTGATAGTTACTATGATCCATACAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGAACTATAAAGAAAGGCGACAGAGTTTTTTTTATGGCTAGTGGTAAGGATTATTTTGCCGATGAAATTGGAGTTTTGTCTCCCAATCAACTTCAAGCTGAAGAGTTGTTTGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCCAGAGTGGGTGACACGATCACTCACCATTTTAGAAAGGCAGACAATTCACTCCCTGGATATGAGGAAGCCACTCCGATGGTGTTCTGTGGCCTGTTTCCTGTTGATGCTGACCAATTTGCTGAGCTACGAGATGCACTTGAGAAGCTTCAACTCAATGATGCTGCACTGAAGTTTGAACCTGAGACCTCAAGTGCTATGGGATTTGGCTTTAGATGTGGGTTTTTGGGACTTCTCCACATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACTACTGCTCCAAGTGTTGTATACAAAGTGAACTGTGTTAATGGTGATACTGTTGAATGCTCAAATCCATCTTTACTTCCTGAGCCGGGTAGAAGAAAATCAATTGAGGAGCCAGTTGTTAAGATTGAGATGCTTACGCCAAAGGACTATATTGGTCCGCTTATGGAACTGGCTCAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATCACTGAAATTAGGGCATCACTCACCTATGAATTACCACTAGCTGAGGTAATTGTTTGCATTAGTTCTTGTTGGTTTACCCTGTAA 1638 0.409 MAAEICGGSLFLSVKTQQQQQRLFHHSQQRFNSSKPRFSFHSSNSSTFHRRGSSSVFCRVASTDTLSDFDSTARDGQDRLSKVPISNIRNFSIIAHIDHGKSTLADKLLQVTGTVPQREMKEQFLDNMDLERERGITIKLQAARMRYVFENKPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALDNNLEIIPVLNKIDLPGAEPDRVIKEIEEVIGLDCSNAILCSAKEGIGIMDILNAIVARIPPPPDTSKRPLRALIFDSYYDPYRGVIVYFRVVDGTIKKGDRVFFMASGKDYFADEIGVLSPNQLQAEELFAGEVGYLSASIRTVADARVGDTITHHFRKADNSLPGYEEATPMVFCGLFPVDADQFAELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYKVNCVNGDTVECSNPSLLPEPGRRKSIEEPVVKIEMLTPKDYIGPLMELAQERRGQFKEMKFITEIRASLTYELPLAEVIVCISSCWFTL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01247 545 PANTHER TRANSLATION FACTOR GUF1-RELATED 76 536 IPR006297 GO:0005525
Tsu07g01247 545 SUPERFAMILY Translation proteins 248 361 IPR009000 -
Tsu07g01247 545 CDD LepA 89 266 - -
Tsu07g01247 545 CDD EF4_III 376 451 - -
Tsu07g01247 545 CDD EF4_II 274 359 - -
Tsu07g01247 545 Hamap Elongation factor 4 [lepA]. 83 545 IPR006297 GO:0005525
Tsu07g01247 545 Gene3D - 451 537 - -
Tsu07g01247 545 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 76 536 - -
Tsu07g01247 545 TIGRFAM lepA: elongation factor 4 87 536 IPR006297 GO:0005525
Tsu07g01247 545 PRINTS GTP-binding elongation factor signature 133 141 IPR000795 GO:0003924|GO:0005525
Tsu07g01247 545 PRINTS GTP-binding elongation factor signature 90 103 IPR000795 GO:0003924|GO:0005525
Tsu07g01247 545 PRINTS GTP-binding elongation factor signature 209 218 IPR000795 GO:0003924|GO:0005525
Tsu07g01247 545 PRINTS GTP-binding elongation factor signature 173 184 IPR000795 GO:0003924|GO:0005525
Tsu07g01247 545 PRINTS GTP-binding elongation factor signature 157 167 IPR000795 GO:0003924|GO:0005525
Tsu07g01247 545 SUPERFAMILY EF-G C-terminal domain-like 375 453 IPR035647 -
Tsu07g01247 545 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 126 141 IPR031157 -
Tsu07g01247 545 Pfam Elongation factor G C-terminus 482 535 IPR000640 -
Tsu07g01247 545 TIGRFAM small_GTP: small GTP-binding protein domain 89 257 IPR005225 GO:0005525
Tsu07g01247 545 Pfam Elongation factor Tu domain 2 288 358 IPR004161 GO:0005525
Tsu07g01247 545 SUPERFAMILY EF-G C-terminal domain-like 482 535 IPR035647 -
Tsu07g01247 545 Pfam Elongation factor Tu GTP binding domain 87 264 IPR000795 GO:0003924|GO:0005525
Tsu07g01247 545 Gene3D - 84 268 IPR027417 -
Tsu07g01247 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 284 IPR027417 -
Tsu07g01247 545 Gene3D Translation factors 269 368 - -
Tsu07g01247 545 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 86 267 IPR000795 GO:0003924|GO:0005525
Tsu07g01247 545 Gene3D Elongation Factor G (Translational Gtpase), domain 3 369 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01247 Tsu-Chr7 10817118 10824512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01247 87 321 Eukaryotic Initiation Factors Gene Family AT3G22980 34.274 1.37e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01247 K21594 - gmx:100784073 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01247 07 10817118 10824512 Tsu07g01247 07 10817118 10824512 ECH