Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01235 ATGGGTAGATCTCCTTGTTGTGAGAAAGAACACACAAACAAAGGTGCTTGGacaaaggaagaagatgaacgTCTCATTAACTACATCAAACTTCATGGGGAAGGTTGTTGGAGATCTCTTCCAAAAGCTGCTGGATTGCTGAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTCAGACCTGATCTCAAGAGAGGAAACTTCACTGAACAAGAAGATGATCTTATTATCAACCTCCACACCTTACTTGGAAACAAATGGTCGCTAATAGCTGCGAAGTTACCAGGAAGAACGGATAATGAAATCAAGAATTACTGGAACACTCACATCAAGCGAAAGCTTTATAGCCGTGGAGTTGATCCCCAAACTCATCGACCACTTAACGACTCAACAGCATCCACCACAAGCAATAAGAACACGATCATCAACAATATTAGCATCATtaacagcagcagcaacaacaacaataacaacggTAGTTTTCAGTTAGTTAGTGGCTATAAAAATGCAAAGATTAATGTAACCAAATTGGTTTCTGaggattcaaattcaaatagtAGTAGCGCCGTTAGCTCCGAGGAAacatatcatcatcaacaactcATCAACTTGGACCTTTCGATCGGTCTTCCTTCGTTGACGTCACATACTCAAGTTAACACGAACAAATTGAAATTAGAACAACTACAAGGTGATGAGCAACAAGAAACAAAGGTTATTACAACTAGTCATGGTTTGTGTCTTTGTTACAGTTTAGGATTTCAAAGTAACCAAGTGTGTTGCTGCAACAAAACCATAGGTAATAGTATTAACACTACAACTGCTGCTGATACTAATATGTATAGATTTTACAGACCAATGGATATTTAG 876 0.3482 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEQEDDLIINLHTLLGNKWSLIAAKLPGRTDNEIKNYWNTHIKRKLYSRGVDPQTHRPLNDSTASTTSNKNTIINNISIINSSSNNNNNNGSFQLVSGYKNAKINVTKLVSEDSNSNSSSAVSSEETYHHQQLINLDLSIGLPSLTSHTQVNTNKLKLEQLQGDEQQETKVITTSHGLCLCYSLGFQSNQVCCCNKTIGNSINTTTAADTNMYRFYRPMDI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01235 291 CDD SANT 69 112 IPR001005 -
Tsu07g01235 291 Gene3D - 68 144 - -
Tsu07g01235 291 CDD SANT 16 61 IPR001005 -
Tsu07g01235 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu07g01235 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu07g01235 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu07g01235 291 PANTHER TRANSCRIPTION FACTOR MYB7 1 248 - -
Tsu07g01235 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu07g01235 291 SMART sant 13 63 IPR001005 -
Tsu07g01235 291 SMART sant 66 114 IPR001005 -
Tsu07g01235 291 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Tsu07g01235 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 248 - -
Tsu07g01235 291 Gene3D - 14 66 - -
Tsu07g01235 291 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tsu07g01235 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01235 Tsu-Chr7 10674093 10675707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01235 1 266 MYB Transcription Factor Family AT4G38620 52.239 4.86e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu07g01235 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01235 K09422 - gmx:778033 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01235 07 10674093 10675707 Tsu07g01235 07 10674093 10675707 ECH
Tsu02g00576 02 4865996 4867427 Tsu07g01235 07 10674093 10675707 PCT