Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01190 ATGGATAAGAGGAGAGAATCATGGGAAGAAGAGGGGAAAAATGATGAGAATTTGTTTCCAGTTTTTTCTGAAAGATCTCAGCAAGATATGTCAGCTATAGTATCAGCACTTACACAAGTTATGGGTGGCAATAACAACAGTGAAATGCATGAAGCTTCTTCAATTCATAATATTACTCAACAATCTCAACTACCACAAGAAGATCAAGGGAGTGTAAGAAGAAGACACTATAGAGGTGTAAGGCAGAGACCATGGGGGAAATGGGCTGCAGAGATTCGCGATCCGAAGAAAGCAGCAAGAGTATGGCTAGGAACCTTTGAAACTGCTGAGGCTGCAGCTATTGCCTATGATGAAGCTGCACTAAGATTCAAAGGAAGCAAAGCTAAGCTCAATTTTCCTGAAAGAGTTCAAAGTTCAGCAGAATTTGGATATAACCAAGAATTTCATAACCTAGTTTCAAACACAAGTAACGTGCAACAATCTAATCAACAAGTTCCTCTTCCACAATTTTCTCAAGAAACATATTCAAATCCTTATCAATATGCTGCACAAGCACAACTTCAAGCTAGTGGCAGTAGTAGTAACTTCAATCAGGATATGCTTCGTTTCTATGGGAGAGATATGTTTGTTTCTAATTCTCAGCCTTTAATATCAACTTCATCTTCGTCTTCATCCTCGTCTTCTGGAttatctcaacaacaacaagagTTTTTGAGATTGTCGATGCAATTCGGAggttcttcttcctcttcttccgCTTATGAGCCTCCAAGAAATTGGGGGGATGGACAACAATGA 798 0.3709 MDKRRESWEEEGKNDENLFPVFSERSQQDMSAIVSALTQVMGGNNNSEMHEASSIHNITQQSQLPQEDQGSVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAAIAYDEAALRFKGSKAKLNFPERVQSSAEFGYNQEFHNLVSNTSNVQQSNQQVPLPQFSQETYSNPYQYAAQAQLQASGSSSNFNQDMLRFYGRDMFVSNSQPLISTSSSSSSSSSGLSQQQQEFLRLSMQFGGSSSSSSAYEPPRNWGDGQQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01190 265 PANTHER DNA-BINDING DOMAIN 23 247 IPR044808 GO:0003700|GO:0009873
Tsu07g01190 265 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Tsu07g01190 265 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
Tsu07g01190 265 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Tsu07g01190 265 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Tsu07g01190 265 MobiDBLite consensus disorder prediction 244 265 - -
Tsu07g01190 265 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Tsu07g01190 265 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Tsu07g01190 265 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Tsu07g01190 265 MobiDBLite consensus disorder prediction 58 78 - -
Tsu07g01190 265 MobiDBLite consensus disorder prediction 215 234 - -
Tsu07g01190 265 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Tsu07g01190 265 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01190 Tsu-Chr7 10159982 10161517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01190 17 197 AP2-EREBP Transcription Factor Family AT5G61890 54.974 9.57e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu07g01190 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01190 - - gmx:100787091 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01190 07 10159982 10161517 Tsu07g01190 07 10159982 10161517 ECH