Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01184 ATGCCGTTTGAAATAATGAACCAAAGGGGTGTTACTGCTTCATCCCATCTTTATGATGATGTTTCCTATGCTTCTgagAGGAATGATGGATTACGGAAGCCGGAATCCATTCATGATGATCATACACAAGGAAAGGGTGAAATTGCAGCTTCACCTGGAGGCATTTTGCATACTTCATCAACCCTCGAAAGAAATGCAAAAACAGGCTTGCCCATGTCACAGACTAGTCTATCTGGGGAAATTTCAGGAAACCTACACTTTGGTGGACAAGCTGGCATTGTAGATGTGCTGAAGGATTCGAAGGAATCGTTGAATTATCATCCAACGTCATGGTCTGATGTGCATAGGCAGCCAGCGTCTAGCTCATATGGTTTAATTGGGAACAGGGTTTTCACCAATGCAGGCTCACGTGAAAGTAGTCTATTCTCGAGCTCACTGTCCGATATGTTTAGCCAAAAGTTGAGGTTATTGGGAAATAATAATGTTGGTTTTCTTCCTGAGGAAGAACCATACAAATCTCTTGAAGAAATTGAGGCCGACACTATAGGGGATCTCCTTCCTGACGAAGATGATCTGTTTTCCGGTGTCACTGATAATTTAGGAAGCAGTGCTCATGCCAAAACAAATGAtgattttgaagattttgatTTGTTCAGCAGCGGCGGAGGCATGGAGTTGGAAGGAGATGAACTTTTAGTTTCAGGAAAAAGAATCAGTGGCTTGGAATTGGATGGAGATGCTGCTTACTTTGGGGGTTCCAAAGGCAAAAGTCCTTCTGGTGAACAATCTTCTAGAACGCTTTTTGTTAGAAACATTACTAGCAATGAAGAAGACTCGGAGCTAAAGGCTCTATTTGAGCAATATGGAGATGTCCGAACCATTTATACTGCCTGCAAGCATCAAGGGTTTGTTATGGTTTCATATTATGACCTAAGGGCTGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAATTCTAGGAATCTGGATATACATTATTCATTTCCAAAGGGAAATGCTTCAGAGAAGGATATTAGCCATGGTACACTGATGATTTCTGGTCTTGATCCATCTGTTTTGAAAGACGAACTAAAAcatatttttgggttttatggaGAAATCAAAGAAATCTATGAATATCCAGAAATGaatcatatcaaatatattgaattttatGATGTTCGAGGTGCAGAAGCTTCTCTCCGTTCATTGAATGGGATCTGCATTGCTGGGAAGCACATCAAGCTTGAACCTGGCCATCCTAAGAATGCAACACGTATGATGAAGCCGTCTCAAAAGGGACAAGATGAACCTGATCTTGGTCATAATCTCAATGACATCTTATTTTTACGACAAAAGGGAGTGGCTTCGGGCGTTATTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCATAGATTCCAATCTGCATCACAGCTGCCTTTGAATGCTTTCATTGATAACACAATGTTTCACAGTATGTCCAACACCGCAAGAGGGGCATCTGCTGTAGCGGTATCTGGTGCTCGTGAGTCCAGTAATGCTGTTGATGCAATGAAATTTGCATCTATTCCAAGATTCCACCCTCATTCTTTGCCTGAGTATCGTGATGGTTTAGCTAATGGTAGTCCTTACAATTTGTCAAATACCATTAAAATGGCTGCCAATATTGGAACTGGATCCACAGAAGCATCTGACAGAAGGCACATTCAGGGAATGAGCTCAACTGGGAACTTAGCAGAATTTAATGCAGGAGGGAATGGGAGTCTTCCTCACCATCAGCTTTATCATATGTGGAATGGCTCAAACTTGCATCAGCAATCTCCATCAAATGCTATGGTTTGGCAGAAATCACCATCTTTTGTTAATGGCGCCTGTGCTCCAGGTCTTCCACAGATGCCCAGCTTTCCCAGGTCACCGGCTCATGTGCTGAGAGCTTCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACAGGATCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCTCCTGATGCTCCTGGTTTTAGACTGGGTTCTCTTGGAAATGGAGGTTTTCATGGTAGCTGGCAGTTGCATCCTCCAGATCTTTCTAGCaacatgttttctcatgttgGTGGGAATGGTAATGATTTGACATCCAGTGTTGCGCAGGGCTCTCCTAAGCAGTTGTCACATGTCTTCTCTGGGAGACTTCCCATGACTTCAATGTCAAAATTTGATTCTACCAATGATCGGATGAGAAACCTCTATCATCGTCGAAGTGAAGCAAACAATAACAATGCTGATAAAAAACAATATGAACTCGACCTAGGCCGCATATTGCGTGGGGAAGACAACCGAACAACacttatgataaaaaatattccCAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGCAATGTTGGCTATGCATTCATTAATATGACTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTCATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCCGTACTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGTCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTATTCCATACAGATGGTCCAAATGCTGGTGATCCGGAGCCTTTCCCCCTGGGCGCCAATGTTAGAGTAAGGCCAGGAAAATTACGTAATTGTGGCAGCGAGGAGAACCGTATTCAAGGGAATTCTTCAACTTTGGCAAGTGCAGAGGAGTTTGCTAGTGGAATACATTCTTCACCAAGTTCTTCAAGAGACACTGACTGA 2892 0.4111 MPFEIMNQRGVTASSHLYDDVSYASERNDGLRKPESIHDDHTQGKGEIAASPGGILHTSSTLERNAKTGLPMSQTSLSGEISGNLHFGGQAGIVDVLKDSKESLNYHPTSWSDVHRQPASSSYGLIGNRVFTNAGSRESSLFSSSLSDMFSQKLRLLGNNNVGFLPEEEPYKSLEEIEADTIGDLLPDEDDLFSGVTDNLGSSAHAKTNDDFEDFDLFSSGGGMELEGDELLVSGKRISGLELDGDAAYFGGSKGKSPSGEQSSRTLFVRNITSNEEDSELKALFEQYGDVRTIYTACKHQGFVMVSYYDLRAAQNAMKALQNRSLNSRNLDIHYSFPKGNASEKDISHGTLMISGLDPSVLKDELKHIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICIAGKHIKLEPGHPKNATRMMKPSQKGQDEPDLGHNLNDILFLRQKGVASGVIASGGSLENGYNHRFQSASQLPLNAFIDNTMFHSMSNTARGASAVAVSGARESSNAVDAMKFASIPRFHPHSLPEYRDGLANGSPYNLSNTIKMAANIGTGSTEASDRRHIQGMSSTGNLAEFNAGGNGSLPHHQLYHMWNGSNLHQQSPSNAMVWQKSPSFVNGACAPGLPQMPSFPRSPAHVLRASHIDHHVGSAPVVTGSPWERQHSYLGESPDAPGFRLGSLGNGGFHGSWQLHPPDLSSNMFSHVGGNGNDLTSSVAQGSPKQLSHVFSGRLPMTSMSKFDSTNDRMRNLYHRRSEANNNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLTAIDESCRGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANVRVRPGKLRNCGSEENRIQGNSSTLASAEEFASGIHSSPSSSRDTD 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01184 963 MobiDBLite consensus disorder prediction 931 963 - -
Tsu07g01184 963 MobiDBLite consensus disorder prediction 925 963 - -
Tsu07g01184 963 CDD RRM1_MEI2_like 264 339 IPR034453 -
Tsu07g01184 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 417 IPR000504 GO:0003723
Tsu07g01184 963 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 331 IPR000504 GO:0003723
Tsu07g01184 963 Gene3D - 242 347 IPR012677 -
Tsu07g01184 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 338 IPR000504 GO:0003723
Tsu07g01184 963 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 350 423 IPR000504 GO:0003723
Tsu07g01184 963 SUPERFAMILY RNA-binding domain, RBD 262 425 IPR035979 GO:0003676
Tsu07g01184 963 Gene3D - 781 873 IPR012677 -
Tsu07g01184 963 SMART rrm1_1 789 867 IPR000504 GO:0003723
Tsu07g01184 963 SMART rrm1_1 351 419 IPR000504 GO:0003723
Tsu07g01184 963 SMART rrm1_1 266 334 IPR000504 GO:0003723
Tsu07g01184 963 SUPERFAMILY RNA-binding domain, RBD 789 874 IPR035979 GO:0003676
Tsu07g01184 963 Pfam RNA recognition motif 2 787 883 IPR007201 -
Tsu07g01184 963 Gene3D - 348 441 IPR012677 -
Tsu07g01184 963 MobiDBLite consensus disorder prediction 26 55 - -
Tsu07g01184 963 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 963 - -
Tsu07g01184 963 CDD RRM3_MEI2_like 790 875 IPR034454 -
Tsu07g01184 963 MobiDBLite consensus disorder prediction 26 45 - -
Tsu07g01184 963 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01184 Tsu-Chr7 10119960 10127797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01184 259 440 Eukaryotic Initiation Factors Gene Family AT3G16380 24.138 1.11e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01184 - - gmx:100797616 1466.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00552 02 4673473 4678991 Tsu07g01184 07 10119960 10127797 ECH
Tsu07g01184 07 10119960 10127797 Tsu07g01184 07 10119960 10127797 ECH