Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01181 atgaattttgcAAAACTCAACGACTCTCCCATGTTTCGTCAACAGCTTCAGAGTTTGGAAGAAAGTGCAGAATCGTTACGTTCCAGATGTTGGAAGTTCTACAAAGGATGTAGAAAGTACACGGAAGGGCTAGGAGAGGCATATGATGGAGACATTGGATTTGCAACTGCCCTTGAAAGTTTTGGAGGAGGCCATAGTGACCCTCTTTTTGTAACTTTGGGAGGACCTGTAATGACCAAATTCTCTATTGCTTTGAGAGAAATCAGTACACACAAGGAACTTCTTCGGTCACAGATCGAGCATATGCTGAATGACCGGTTACTCAACATCCTAAATGTCGAAATCCTTGATGTCAAGGAAGCTCGGAAGCGTTTTGATAAAGCTTCTCAAGTATATGATCAGGCACGTGACAAGTTTATGTCATTGAGAAAAAGCACCAAGTTTGATGTTGCAGCGGTGATAGAAGAGGAATTGCACAATGCAAGAACAATATTCGAGGAAGCTCGTTTCAATCTGGTTGGTGCTCTTCATAATATTGAGGCAAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCAGTTACAAGAGCTGGAGCCTTTCATTATTGAGGTTTTGGCTTATGCACAAAAGGCAAGAGAAAGTTACAATGAGGAGCAGATTTCTCTTTGTGAAAGAATGGTAGAGTACAAAAAACTAAGTTACCAAGAAAGTAGATTGTCCTTGAATGGTCCCTATGGCTCTCCCAGTGCAGAAAATGCGCATATGCATCCTTTTTCTAGGATATCAAGTAGTGTGCTAGATGCAGTAACTGAATCAGCTGCAAATGGAAAGGTTCGAGTCATTCGACAAGGGTATCTTTCAAAACGTTCCTCGAATTTGAGGGGCGACTGGAAGAGAAGATTTTTTGTTCTTGATAGCCTCGGAACGCTTTACTACTATCGTAAACCATTACAAGTAAATAGTCACAATCAGCAATTTACACAGAGGAATTGTGCCAATGAAAACAGTGCTGGCATTCTGAGTAGATTGCTTTCTTCACAATACCATGGAGTTGTTCCTGATGAAAAATCTGTTGCACGTCACACGGTGAACCTGCTCACATCAACAATCAAGGTTGATGCTGAGCAATCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCCTCAAAGATGTATACTTTGCAGGCAGAAAATGCCCTAGACCAGATGGATTGGATGGAAAAAATAAACGGAGTCATTGCGTCCTTATTGTCTGTACAGACACTAGGTGTAAAGTATAAATCAGCTGACTCGGAAAGCTATGACAGCGACTCTTCCAACAACACCGACACATTACAAAGTTTACAAGACCATGATCAATTAGTGATTGGAGAATTTGCACctaaaaaatcatttgaaaaatcATTTGAAGACTCGCAGAAGAATAAGCAGTGTGTAAAAGTTGAACAACCAATTGATATTCTAAGAAAGGTTAGCGGGAATGATAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGTATCCTTGTATGTATTGAATGTTCCGGCGTTCACCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGAAACTTGATGTCAAAGTGTGGGATTCCTCCGTCTTAACTATGTTTCAGTCACTTGGAAATCTCTTCGCGAACTCGGTCTGGGAGGAGCTTTTGCATGCAGCAACAAGTACTTCACAAACTGATGACACTCCTTATGGTTCATCCAAAGGCGATAAAAACAAGTTAGGTCATGCAAGAAAACTAGAAATTGATGATCCTATTTCACTAAAGGAAAGATTCATTCATGCAAAGTATTCGGAGAAAGTTTTTGTTCGGCAGCTGCCAAAAAGCCACCACCTTCTTTCAGTGGCACAACAAGTGATGGAATGCATCTGCGCCAATGACAAGAAAGCAGTGTACCGGCACATTGTCAAATCAGATGTGGATATCAATTCTGTTAGTGGAGACATAATATCCGGCTATTTTTCTAATATGTCGACTTCAAGTGATTCACACAAATCTTCTACAAGTAAAGCTCAGATAATGGAGGACATACACGAAGGTTCTAGTGTGCTTCACTTGGCTTGCATAACAAGTGATGCTGGAATGATAGAGCTTCTTCTACAGTATGGTGCAGATGTAAATGCTATTGATTCGAGAGGTAGGACGCCGCTGCATTACTGCATTTTGAGAGGAAAGACTGCAGCTGCCAAATTGTTTATTACAAGGGGGGCCAATCCACTTGCTTTAGATAACGAAGGCAACACTCCGCTTATGCTTGCACCAGAACCTGGGGCTATTGGCAAAGACATTCTTGCTCTCTTATCAAGCAGATGA 2412 0.4071 MNFAKLNDSPMFRQQLQSLEESAESLRSRCWKFYKGCRKYTEGLGEAYDGDIGFATALESFGGGHSDPLFVTLGGPVMTKFSIALREISTHKELLRSQIEHMLNDRLLNILNVEILDVKEARKRFDKASQVYDQARDKFMSLRKSTKFDVAAVIEEELHNARTIFEEARFNLVGALHNIEAKKRFEFLEAVTGVMDAHLRYFQQGYQQLQELEPFIIEVLAYAQKARESYNEEQISLCERMVEYKKLSYQESRLSLNGPYGSPSAENAHMHPFSRISSSVLDAVTESAANGKVRVIRQGYLSKRSSNLRGDWKRRFFVLDSLGTLYYYRKPLQVNSHNQQFTQRNCANENSAGILSRLLSSQYHGVVPDEKSVARHTVNLLTSTIKVDAEQSDLRFCFRIISPSKMYTLQAENALDQMDWMEKINGVIASLLSVQTLGVKYKSADSESYDSDSSNNTDTLQSLQDHDQLVIGEFAPKKSFEKSFEDSQKNKQCVKVEQPIDILRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLKLDVKVWDSSVLTMFQSLGNLFANSVWEELLHAATSTSQTDDTPYGSSKGDKNKLGHARKLEIDDPISLKERFIHAKYSEKVFVRQLPKSHHLLSVAQQVMECICANDKKAVYRHIVKSDVDINSVSGDIISGYFSNMSTSSDSHKSSTSKAQIMEDIHEGSSVLHLACITSDAGMIELLLQYGADVNAIDSRGRTPLHYCILRGKTAAAKLFITRGANPLALDNEGNTPLMLAPEPGAIGKDILALLSSR 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01181 803 SUPERFAMILY Ankyrin repeat 656 790 IPR036770 -
Tsu07g01181 803 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Tsu07g01181 803 CDD BAR_SFC_plant 15 215 IPR035670 -
Tsu07g01181 803 ProSiteProfiles Ankyrin repeat profile. 745 777 IPR002110 GO:0005515
Tsu07g01181 803 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Tsu07g01181 803 Pfam BAR domain of APPL family 6 233 - -
Tsu07g01181 803 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 801 - -
Tsu07g01181 803 SMART PH_update 295 431 IPR001849 -
Tsu07g01181 803 CDD ArfGap 500 630 - -
Tsu07g01181 803 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Tsu07g01181 803 SUPERFAMILY PH domain-like 295 439 - -
Tsu07g01181 803 Gene3D - 642 801 IPR036770 -
Tsu07g01181 803 Pfam Putative GTPase activating protein for Arf 500 636 IPR001164 GO:0005096
Tsu07g01181 803 ProSiteProfiles Ankyrin repeat region circular profile. 712 743 - -
Tsu07g01181 803 SMART ANK_2a 745 774 IPR002110 GO:0005515
Tsu07g01181 803 SMART ANK_2a 712 741 IPR002110 GO:0005515
Tsu07g01181 803 SMART arf_gap_3 497 643 IPR001164 GO:0005096
Tsu07g01181 803 Coils Coil 118 138 - -
Tsu07g01181 803 SUPERFAMILY ArfGap/RecO-like zinc finger 497 638 IPR037278 -
Tsu07g01181 803 CDD PH_ACAP 297 433 - -
Tsu07g01181 803 ProSiteProfiles ARF GTPase-activating proteins domain profile. 497 643 IPR001164 GO:0005096
Tsu07g01181 803 Pfam PH domain 295 428 IPR001849 -
Tsu07g01181 803 Gene3D Arf GTPase activating protein 477 641 IPR038508 -
Tsu07g01181 803 ProSiteProfiles Ankyrin repeat region circular profile. 745 771 - -
Tsu07g01181 803 Gene3D - 287 438 IPR011993 -
Tsu07g01181 803 PANTHER CENTAURIN/ARF 1 801 IPR045258 GO:0005096
Tsu07g01181 803 Pfam Ankyrin repeats (many copies) 714 766 IPR002110 GO:0005515
Tsu07g01181 803 PRINTS HIV Rev interacting protein signature 509 528 IPR001164 GO:0005096
Tsu07g01181 803 PRINTS HIV Rev interacting protein signature 551 572 IPR001164 GO:0005096
Tsu07g01181 803 PRINTS HIV Rev interacting protein signature 528 545 IPR001164 GO:0005096
Tsu07g01181 803 ProSiteProfiles PH domain profile. 294 429 IPR001849 -
Tsu07g01181 803 ProSiteProfiles Ankyrin repeat profile. 712 744 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01181 Tsu-Chr7 10085268 10091267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01181 501 637 C2H2 Transcription Factor Family AT4G21160 39.130 1.57e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01181 K12489 - gmx:100797073 1116.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01181 07 10085268 10091267 Tsu07g01181 07 10085268 10091267 ECH