Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01180 atgaTTTCCAGAATGAAcagcaacaacaataataatggtTGTTGGatagaagaaagagaagatgaaaacaGTACAAACCCAAACACTCCTTCATCAGCTTCTCCTTTCAtccataacaacaacaacacacaaGATTTCTCTTCTTTCATCAAACCCATGCTTCAAATCAACGATGAAGATGCTGCTGAATGGTACATTAGAGACATGGCTTTTTCACCTAACTTAGACAACGTTTTACTCAACAACGTTGATTCtgtttcttcatcttcatgttCACCTTCTTCTTCCATTTTCAACTCACTTGATCCTTCATTACCTTCACCATCAAATCTTCAGTATTTTCTTCCtccaacaaatcctaaacccattaacactaacaccctttcttctcttctcctcaacaacaacaacccttTTGAGATTCCATGTGAACTTGGTTTTCTTGATCATCAAGTTTCAACTTTGCCTGGTTGTTCTTCGTTTCTGGGTAGTTTTGATTTCACTTCAAAAAATCAGTTGAGCTTACCCCATTTGCCTCAGTTGCCTCAAATCAACAATGGCTTCAACGGCTTCAATGGCTTCATGGGGTTACAGAACTCTCAAGAGGGTTCTGGAAAGTCACTGTTTTTGAACAGGTCTAAGATTTTGAGACCTCTTGATTCTTTACCTTCTTCTGGAACACAACCAACTCTGTTTCAGAAAAGAGCAGCACTGAGAAAAAACATGGGAAAGTGTGAAATTGGTGGAGGAAGTGATAAGAAAAGGAAGATGAGTGGTGGAGATGAATTTGATGATTTGAGTTTTGATGGGTCTGGTTTGAATTATGATTCTGATGATTTGACTGAGAGTAATAATTTTGGTAAGATTGAAGAGAGTGATGGAAAAAATTGTGGAAATGGTTCTAATGGTAATAGTACTGTAACTGGTGGTGTTGATCAGAAAGGGAAGAAGAAAGGAATCCCTGCTAAGAATTTGATGGCGGAACGTCGTCGCCGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAatGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAACTTTTGCAAAGGATCAATGACCTTCATAATGAGTTGGAATCAGCACCTGCTGGATCTTCACTAACACCTGCTTCAAGCTTTCATCCTTTGACACCGACTCCGTCTTCGTTGCCGAGTCGTATCAAAGAAGAACTATGCCCCAGCTCATTGCCAAGCCCTAATGGCCAACCTGCCAGGgTTGAGGTTCGGTTGCGGGAAGGAAGGGCTGTGAATATTCACATGTTTTGTGCTCGCAAACCTGGTCTTTTGCTGTCAACCATGAAGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATAAGCTGTTTCAATGGATTTGCTATGGATATATTTAGAGCCGAGCAATGCAAAGAAGGTCAAGATATCCATCCAGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTTCAATGGCATGGCCTAA 1533 0.3679 MISRMNSNNNNNGCWIEEREDENSTNPNTPSSASPFIHNNNNTQDFSSFIKPMLQINDEDAAEWYIRDMAFSPNLDNVLLNNVDSVSSSSCSPSSSIFNSLDPSLPSPSNLQYFLPPTNPKPINTNTLSSLLLNNNNPFEIPCELGFLDHQVSTLPGCSSFLGSFDFTSKNQLSLPHLPQLPQINNGFNGFNGFMGLQNSQEGSGKSLFLNRSKILRPLDSLPSSGTQPTLFQKRAALRKNMGKCEIGGGSDKKRKMSGGDEFDDLSFDGSGLNYDSDDLTESNNFGKIEESDGKNCGNGSNGNSTVTGGVDQKGKKKGIPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESAPAGSSLTPASSFHPLTPTPSSLPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMKALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDIHPEQIKAVLLDSAGFNGMA 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01180 510 PANTHER BHLH TRANSCRIPTIONAL FACTOR 101 509 - -
Tsu07g01180 510 CDD ACT_UUR-ACR-like 439 499 - -
Tsu07g01180 510 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 386 IPR036638 GO:0046983
Tsu07g01180 510 MobiDBLite consensus disorder prediction 1 38 - -
Tsu07g01180 510 MobiDBLite consensus disorder prediction 382 406 - -
Tsu07g01180 510 Gene3D - 313 383 IPR036638 GO:0046983
Tsu07g01180 510 CDD bHLH_AtAMS_like 322 387 - -
Tsu07g01180 510 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 368 IPR011598 GO:0046983
Tsu07g01180 510 SMART finulus 325 374 IPR011598 GO:0046983
Tsu07g01180 510 MobiDBLite consensus disorder prediction 244 263 - -
Tsu07g01180 510 MobiDBLite consensus disorder prediction 295 311 - -
Tsu07g01180 510 MobiDBLite consensus disorder prediction 382 405 - -
Tsu07g01180 510 Coils Coil 358 382 - -
Tsu07g01180 510 MobiDBLite consensus disorder prediction 285 321 - -
Tsu07g01180 510 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 101 509 - -
Tsu07g01180 510 MobiDBLite consensus disorder prediction 246 263 - -
Tsu07g01180 510 Pfam Helix-loop-helix DNA-binding domain 326 368 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01180 Tsu-Chr7 10081004 10083864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01180 42 483 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.717 2.25e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g01180 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01180 - - vra:106778861 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01180 07 10081004 10083864 Tsu07g01180 07 10081004 10083864 ECH