Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01169 atGGCAGCTTTTTCATATCAATACCATCCTTTCCTTGTTGACTCATCATTCATGCTTAACATGAACACTTGTTCTTCTCCATCTTCTTCACAGTTTCATCCTCTTCATCAGGATATAATTAACTGTGTTGATCAACAAAGCTCCAAAGTTACTACCATCATGAGTGATAATGAACCTTCTTCTGTCACTAAAAACCTTAGTCCTCAATCCTCCATGGTACTCGACAAACTCGAAACCGGTGATGAACAGGTTACACAAAAAGTTTCTCCTATGGAGAAGAAGAGGAGAGCCAGAAACAATGGACCTTCCTCTACTAAGCAACAATCTcatGATAATAATTTAGTAGAAGGGAAAAACAAGAAACAGAAAAAGAACAAAGAAGAGGAGAATCCAAAAGCAGAGAAGAAAGATCAGAGGAAGTGTTTGGATGAGCCCCCAACTGGCTACATCCACGTCAGAGCAAGAAGGGGTCAGGCAACTGATAGCCACAGCCTTGCTGAAAGGgtaagaagagagaaaataagtgAAAGGATGAAGAAGTTGCAACAACTTGTGCCAGGCTGTGATAAGGTAACTGGAAAGGCACTTATGTTAGATGAAATAATCAATTATGTTCAGTCTTTACAAAATCAAGTTGAGTTTTTGTCAATGAAACTTACTTCTGTAAACCCTATGTTCTATGACATGGCAACAGACCTAGACACTTTCTTAATTAAACCAGAGAAATTAAATAACTTAGCATCATCATCACAACTATCATCTGTTTGCAATAGTCCTAAACAAGGCACAAATTTTGGTGATACAACAATCATGAGTAATCCAACCAACATCTTCCAAACTACTAATGACTATCTTTTGGATACTTCAACATCAATTTTTCTTCAAGGCCAGAGGACAAATATTCTCTCTGAGgATGGTAGTCATTTTTGGGAGGTAGAAGAGCAGAGACAAAAATTTCTTAATTCACATGGATTCAACAACAATTTATGTTCCTTtcattaa 1002 0.3623 MAAFSYQYHPFLVDSSFMLNMNTCSSPSSSQFHPLHQDIINCVDQQSSKVTTIMSDNEPSSVTKNLSPQSSMVLDKLETGDEQVTQKVSPMEKKRRARNNGPSSTKQQSHDNNLVEGKNKKQKKNKEEENPKAEKKDQRKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYDMATDLDTFLIKPEKLNNLASSSQLSSVCNSPKQGTNFGDTTIMSNPTNIFQTTNDYLLDTSTSIFLQGQRTNILSEDGSHFWEVEEQRQKFLNSHGFNNNLCSFH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01169 333 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 333 IPR024097 GO:0006355
Tsu07g01169 333 Gene3D - 155 228 IPR036638 GO:0046983
Tsu07g01169 333 MobiDBLite consensus disorder prediction 77 145 - -
Tsu07g01169 333 CDD bHLH_AtBPE_like 148 233 - -
Tsu07g01169 333 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Tsu07g01169 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983
Tsu07g01169 333 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 333 - -
Tsu07g01169 333 SMART finulus 164 214 IPR011598 GO:0046983
Tsu07g01169 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 225 IPR036638 GO:0046983
Tsu07g01169 333 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01169 Tsu-Chr7 9996884 9999669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01169 96 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 53.234 9.04e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu07g01169 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01169 - - gmx:100806696 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01169 07 9996884 9999669 Tsu07g01169 07 9996884 9999669 ECH