Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01167 ATGaaggaatcaacaacaacaacacaatcaTCATCAGACCCAATAACAACTTGCCTCAACCTCACCAATTCACTCTTAAACAACGAAATCCCCACCGTCCATCACTTAAAATCCAAATGGTCAATCTTCAAACTCAAACTAACCACACTCCAAACTCACCTCACAGATTTCTCAACCGACTACTCCAACACCTCAACCACAAATCCTCTCTCTCTTCACCTCCTTCACTCCATAACTCAAACCCTAAACGACGCCGTTTCACTCTCTCAACACTGTCAATCTCACTCCCCTGATTTACCTCTCGGTAAACTCCAAACTCAAAGCCAACTCGATTCTCTCATCGCTACTCTCCACCGCCACGTCACCGACTGCGATGTTCTCTTCCGTAGTGGTCTTCTCCTCGAAACTCCCGCTTTCTCTAAACGTGAAGCCGTTCGATCTCTTTCTAGAAACCTAATCGCACGGTTACAAATCGGTTCGTCTGATTCACGCGCTACCGCGATTGACTCGCTTTTATCACTTCTCAATGAAGATGATAAGAATGTTACCATAGCTGTTGCACAGGGCGTAGTTCCGGTGCTCGTTCGGTTACTCGATTCTTCGTCGTCCTCCGATATGAAGGAGAAAACCGTTGCAGCAATTTCTAGAGTCTCTATTGTGGAAAGTGGAAAAAACAATCTACTCGCGGAGGGGTTGTTGTTGCTTAATCATTtggttagggttttggattctGGAAGTGGTTTAGCTATAGAGAAAGCTTGTATTGCGCTTCAGGCGTTGAGTTTTACTAGAGATAATGCTAGAGCGATTGGATCTAGAGGTGGAATTTCGTCTCTGTTAGGGATTTGTCAAGGTGGTACGCCTGGTTCGCAAGCTTCTGCGGCGGCGGTTTTGAGGAATTTGGCGAAATTTAATGAAATTAGAGAGAATTTCGCGGAGGAGAATGCGGTTGTTGTTTTATTAGGGTTGGCTTCTTCTGGAACGGTGTTGGCGCAAGAGAATGCTATTGGTTGTGTTGCGAATTTGATTTCGGAAGATGAGAGTATGAGGATTTTGGCTTTTAAAGAAGGTGGAGTTGAGTGTTTGAAGAATTTCTGGGATTCGGCTCCGGTGATTCAGAGTCTTGAAGTTGGTGTTGAAATGTTGAGATATTTGGCTATGACTGGTCCAATTGCTGAAGTTCTTGTTGCGGAAGGGTTTGTTGGGAGGGTAATGGGAATGTTGAATTGTGATGTTTTAACGGTAAGGATTGCGGCTGCACGAGCGGTTTATGCTATgggtttgaatggtggaagcAAAACGAAAAAGGAAATGGGGGAATGTGGGTGTGTTCCTTTTTTGATTAAGATGTTGGATGGGAAAGGTGCAGAGGAGAAAGAATCTGCTGCAATGGCTTTGTCGGTGTTACTGCAACACCCTTTCAATAGAAGGATTTTTCGTAAGGATGAGAGGGGAATAGTTAGTGCAGTTCATCTGTTGAACCCTTCTTTGGTTAATTTGGATAAGAAATACCCTGTTTCGTTGTTGGTTTCGCTCTTGCATTCGAAGACTTGTAGGAAACAAATGGTGGCTGCAGGGGCTTGTGTATATACGCAGAAGCTTGTTGAATTGGATGTTCCGGGTTCGAAAAAATTGTTAGATGGACTCGGTCGTGGTAAGATATGGGGAGTTTTTGCAAGACCCTAA 1686 0.4259 MKESTTTTQSSSDPITTCLNLTNSLLNNEIPTVHHLKSKWSIFKLKLTTLQTHLTDFSTDYSNTSTTNPLSLHLLHSITQTLNDAVSLSQHCQSHSPDLPLGKLQTQSQLDSLIATLHRHVTDCDVLFRSGLLLETPAFSKREAVRSLSRNLIARLQIGSSDSRATAIDSLLSLLNEDDKNVTIAVAQGVVPVLVRLLDSSSSSDMKEKTVAAISRVSIVESGKNNLLAEGLLLLNHLVRVLDSGSGLAIEKACIALQALSFTRDNARAIGSRGGISSLLGICQGGTPGSQASAAAVLRNLAKFNEIRENFAEENAVVVLLGLASSGTVLAQENAIGCVANLISEDESMRILAFKEGGVECLKNFWDSAPVIQSLEVGVEMLRYLAMTGPIAEVLVAEGFVGRVMGMLNCDVLTVRIAAARAVYAMGLNGGSKTKKEMGECGCVPFLIKMLDGKGAEEKESAAMALSVLLQHPFNRRIFRKDERGIVSAVHLLNPSLVNLDKKYPVSLLVSLLHSKTCRKQMVAAGACVYTQKLVELDVPGSKKLLDGLGRGKIWGVFARP 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01167 561 SMART arm_5 178 219 IPR000225 GO:0005515
Tsu07g01167 561 SMART arm_5 263 303 IPR000225 GO:0005515
Tsu07g01167 561 SMART arm_5 431 471 IPR000225 GO:0005515
Tsu07g01167 561 SMART arm_5 304 344 IPR000225 GO:0005515
Tsu07g01167 561 SUPERFAMILY ARM repeat 151 499 IPR016024 -
Tsu07g01167 561 Gene3D - 141 368 IPR011989 -
Tsu07g01167 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 232 IPR000225 GO:0005515
Tsu07g01167 561 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 2 559 - -
Tsu07g01167 561 Gene3D - 369 537 IPR011989 -
Tsu07g01167 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 2 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01167 Tsu-Chr7 9962565 9964749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01167 150 304 U-box Gene Family AT1G71020 32.258 5.28e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01167 - - gmx:100807228 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01167 07 9962565 9964749 Tsu07g01167 07 9962565 9964749 ECH