Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01150 ATGTGCAAAGTGAAGGTAGAGGAAGGTGCTCCTAATGGGATTCGTGTTGTTGCTACGCCTAATTCGTTGAAACCTATTGCTTTGCCTAAGATTGGTAGTACTGATGGTGGTAATAATGTTAGTGGGATTGGTCTCAAAATGCCGCCGTTGGCTTCGTATTCGGATGTTTATGGTGATTTGATTCGACGGAAGGAGTTTAGTTGTGGGAATTGTGGTGATAAGTGTGGTTCTGGACACTACAAAAGTACCAAGGATAATTTCATTATTTGCACGAAATGTTTCAAGAACGGGAATTATGGGGAGAAAAGGTCCATGGAGGATTTCATATTAAATGAGTCAAGTGAAATTAGTGCCAACCACAGTGCTATCTGGACCGAGGGAGAAACTCTTCTTCTTTTAGAATCTGTTTTGAAGCACGGGGATGACTGGGAACTTGTTGTTCAAAGTGTTCAAACCAAGACTAAGCTTGAATGTATCTCAAAACTTATTGAGCTGCCCTTTGGGGAGCTTATGTTAGGCTCTGCTCGCAGAAATGGTAACAGTTATAGTGTTACCGGAATCATGAACAACGGAAAAGAAGTTCTATCGCCTTCATCCGATCACCAAGAAACTCCAACAACACTGGAAACTTCAACGATACAGGATCAATCTTCGGAgcctaaaaatgaaaatgagcaGAATGGAGATGCTGTGAATGAAAGTTCTTCAAAAAGGCAGCGCGTTGCTCCACTTTCAGATTCCAGCAGTTCACTAATGAAGCAGGTGGGACTGCTCTCTACAGTAGTTGACCCTCATATCACAGCTGCTGCAGCTGATGCTGCTATAACAGCACTTTGTGACGAGAATTTGTTCCCAagggatatatttgatgttgaagAGGATAATGCTTCTAGTGCAAGCTCGCTTATCAGTTGTTCAGCGAGATCCCTCAACGGTGAAGATTCAGAGATGGCGGAGAGGTCCACTCAATCagAAATAGACGCAGGATCCCCAAAAGATGAAATACCATTGACACTGCGTGTAAGAGCTGCCATTGGAACCGCTCTTGGAGCTACTGCTGCTCGAGCAAAGTTGTTGGCGGACCAAGAAGACAGAGAGATTGAACATTTAGTAGCAACTATAATTGAAGCTCAGATGGAGAAGTTGCAACAAAAGGTTAAACATTTTGATGAACTCGAGCTTTTGATGGAAAAGGAACATGCTGAATTGGAAGAGCTTAAAGATTCGATCTTGACTGAACGGATTGATGTGTTGCGGAGGACATTTAAGTCTGGTATCGCTAAATGGAAGGATTATCCTTGCGTTAAATCTTAG 1314 0.4148 MCKVKVEEGAPNGIRVVATPNSLKPIALPKIGSTDGGNNVSGIGLKMPPLASYSDVYGDLIRRKEFSCGNCGDKCGSGHYKSTKDNFIICTKCFKNGNYGEKRSMEDFILNESSEISANHSAIWTEGETLLLLESVLKHGDDWELVVQSVQTKTKLECISKLIELPFGELMLGSARRNGNSYSVTGIMNNGKEVLSPSSDHQETPTTLETSTIQDQSSEPKNENEQNGDAVNESSSKRQRVAPLSDSSSSLMKQVGLLSTVVDPHITAAAADAAITALCDENLFPRDIFDVEEDNASSASSLISCSARSLNGEDSEMAERSTQSEIDAGSPKDEIPLTLRVRAAIGTALGATAARAKLLADQEDREIEHLVATIIEAQMEKLQQKVKHFDELELLMEKEHAELEELKDSILTERIDVLRRTFKSGIAKWKDYPCVKS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01150 437 PANTHER SWI/SNF COMPLEX-RELATED 57 425 - -
Tsu07g01150 437 Coils Coil 389 409 - -
Tsu07g01150 437 Gene3D - 120 168 - -
Tsu07g01150 437 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 57 425 - -
Tsu07g01150 437 Pfam Myb-like DNA-binding domain 124 162 IPR001005 -
Tsu07g01150 437 CDD SANT 124 161 IPR001005 -
Tsu07g01150 437 MobiDBLite consensus disorder prediction 191 247 - -
Tsu07g01150 437 SUPERFAMILY Homeodomain-like 121 171 IPR009057 -
Tsu07g01150 437 SMART sant 120 168 IPR001005 -
Tsu07g01150 437 Pfam SWIRM-associated region 1 347 422 IPR032451 -
Tsu07g01150 437 ProSiteProfiles SANT domain profile. 119 170 IPR017884 -
Tsu07g01150 437 MobiDBLite consensus disorder prediction 310 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01150 Tsu-Chr7 9783373 9789182 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu07g01150 SWIRM-assoc_1 5.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01150 K11649 - gmx:100790238 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01150 07 9783373 9789182 Tsu07g01150 07 9783373 9789182 ECH