Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01143 ATGGAGTGGAATTTGAAAGGTTCTTCTTGGGAtttggggggtatagaagaaGCAACATTACCCAACATAGAAacaatggaagaagaagaagaatcaaacAGATTTGGGAAATTTTCTGTTGATTTAAAGCTTGGTCAAGTTGAGAATTCTGTCACtgatcaatcatcatcatcaccacttCCTTTGTCTAAAGATAAAGATGCTGTTGTTGTTTCCAAAATGGCTTCACCTTCTTCTTCTGGATCTTCTAAGAGAGCTAGAGCTATTAATAATACAACATTGTCAGTTTCTTGTCTTGTTGATGGTTGTAACTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCTAAGACTCCTGAGGTTACAATTGGTGGCCTTAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGATCAAtttgatgaaagaaaaagaagctgTAGGAAACGTTTAGATGGACACAACAAAAGGAGAAGAAAACCTCAACCCGAACCTATCACACGACCTGCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAGTTGCTACCTTTTTCAAGTTCTACTACCATGGTGAATTCACCTTGGAGTAGTAGTGGACTCATTACTTCCTGTGAAAGTGGTAGACTTCACATCCGCAACaaccaacaacaccaacaatTACATGTAGTTGATAAACAAGACCATTTTCTTGGTTCTACAACAACAACCTATGGAGAAGGAAAACAACTTCAATTCTTACACAATgacagcagcagcaacaacaatcCTTCACTTCATAACCAAAACACACCTCTTCTAAGGACAAGTAGCAAAATGTTTTGTGATAGCTTAACAACTTCTTCAGTACATGAATCTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACACATACATCTCATTCAATGGTGCAGCAGCCTCATTCAATGTCTCTTATGCAGCCACCCTTAGGACTGAGCCTGCATGGCAACAACAACAATAGCTTTGAGTCTATGGATAGAGTGTTGGTCCCAAATGGGAGTGAGAGTGATCATTGTTCCTCATTGTATAACATTGGTTCTGATGGATCTCAAAGCAATGATGCACCTCAACTATTTCCCTATCAATGGGAATAG 1152 0.3507 MEWNLKGSSWDLGGIEEATLPNIETMEEEEESNRFGKFSVDLKLGQVENSVTDQSSSSPLPLSKDKDAVVVSKMASPSSSGSSKRARAINNTTLSVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNKRRRKPQPEPITRPAGSFLSNYQGTQLLPFSSSTTMVNSPWSSSGLITSCESGRLHIRNNQQHQQLHVVDKQDHFLGSTTTTYGEGKQLQFLHNDSSSNNNPSLHNQNTPLLRTSSKMFCDSLTTSSVHESPCALSLLSSSQTHTSHSMVQQPHSMSLMQPPLGLSLHGNNNNSFESMDRVLVPNGSESDHCSSLYNIGSDGSQSNDAPQLFPYQWE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01143 383 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 383 IPR044817 GO:0003677
Tsu07g01143 383 SUPERFAMILY SBT domain 96 177 IPR036893 GO:0003677|GO:0005634
Tsu07g01143 383 Gene3D - 89 159 IPR036893 GO:0003677|GO:0005634
Tsu07g01143 383 ProSiteProfiles Zinc finger SBP-type profile. 95 172 IPR004333 GO:0003677
Tsu07g01143 383 MobiDBLite consensus disorder prediction 159 185 - -
Tsu07g01143 383 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 7 383 - -
Tsu07g01143 383 Pfam SBP domain 98 171 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01143 Tsu-Chr7 9716263 9719355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01143 1 383 SBP-box Gene Family AT5G50670 39.655 1.27e-64 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu07g01143 SBP 2.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01143 - - gmx:100787407 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00504 02 4220797 4225184 Tsu07g01143 07 9716263 9719355 PCT