Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01130 ATGGAGAACAACAACCAACAACAATATCCAACGCCACAACCCACGGCGGTTACATCTGCAGCACCATTCCAACACCTtctccaacaacaacaacaacagcttCAAATGTTCTGGTCATACCAAAGACAAGAAATCGAACACGTTAACGACTTCAAAAACCATCAACTTCCATTAGCACGCATTAAGAAAATCATGAAAGCTGATGAAGATGTTCGTATGATCTCTGCTGAAGCACCTATCCTTTTCGCTAAAGCATGTGAACTTTTCATTCTTGAACTCACCATTCGTTCATGGCTTCATGCTGAAGAAAATAAACGAAGAACATTACAGAAAAATGACATTGCTGCTGCTATTACTCGTACtgatatttttgattttttggttgataTTGTTCCTAGAGATGAGATTAAAGAAGAAGGTGCTATGGTTGGTGCTACTGCTAGTGGTGTTCCTTATTATTATCCTCCTATTGGTCAACCTGCTGGTGGAATGATGATTGGTCGTCCGGCTGTTGATCCGGCTACTGGTGTTTATGTTCAGCCTCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACTGGTGCTGATGATGGTTCTTATGCGGCTGCCGGTGGCAGCAGTGGTCAGCACAATGTCGATGGCCAGAGCAGCTGA 651 0.4117 MENNNQQQYPTPQPTAVTSAAPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEEGAMVGATASGVPYYYPPIGQPAGGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGADDGSYAAAGGSSGQHNVDGQSS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01130 216 Pfam Core histone H2A/H2B/H3/H4 26 118 IPR007125 GO:0003677
Tsu07g01130 216 Gene3D Histone, subunit A 20 133 IPR009072 GO:0046982
Tsu07g01130 216 SUPERFAMILY Histone-fold 15 127 IPR009072 GO:0046982
Tsu07g01130 216 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 5 215 - -
Tsu07g01130 216 MobiDBLite consensus disorder prediction 197 216 - -
Tsu07g01130 216 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01130 Tsu-Chr7 9647140 9650596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01130 16 215 CCAAT-HAP5 Transcription Factor Family AT3G48590 80.952 6.29e-105 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu07g01130 Histone 2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01130 - - tcc:18605113 335.495