Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01120 ATGGAGTCTGAAGCTCACATTCACACTCAAAGAGATCGCAGAACATATGCTCTTGGAGATCTCCGAGTTCTTCCCGACGAAACCATCTGCTCAATTTTGGAACGACTCACTCCTCGAGATGCTGCTCGCGTCGCTTGCGTCAGCAGTGTGATGTATATACTATCCAATGAAGAACCATTATGGATGACTCTATGCCTAAGAGGAGCATCTGGTTTTCTTCAATACAAAGGCTCTTGGAAGAAAACTGCTCTGcataaTGAGAATATTCCAGACGAGTACAAAGAGTGGAATAGACCGCCTTTACATTTTGATGGTAACGATTCTGATATCATATGGCTCTCATCTGTCTTCTATATTTTTGGGAAACTTTTGGTATCTGACACTGATATTTATCTTTCTGTAGGATTCAACTCTTTATTTTTGTATCGGAGGTTATACCGGTGTCATACCACATTGGATACATTTTATACAGTCGGTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAAGATTTCTATAGCGAGTATGACATGAAGAAACCGGTCATGCTTAATGGACTGGCGGATACATGGCCTGCCAGGCATAAATGGACAACTGATCAGCTGTTACTAGAATATGGAGACGTAGCGTTTAAAATTTCTCAAAGGAGTTCCAAAAAGGTCTCCATGAAGTTCAAGGATTATGTCTCCTATATGGAAGTTCAACATGATGAAGAcccattatatatttttgacgAAAAGTTCGGCGAACATGCACCTAGCTTATTGAAGGATTACTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATACAGATAAACGACCATCCTATAGGTGGCTCATAATTGGACCACAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACAAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCACCTGGAAAAGTACCTTTAGGTGTGACGGTACATGTTAATGAAGAAGATGGTGATGTCAATATCGAGACACCATCATCACTGCAGTGGTGGCTAGATTTTTATCCTCTTCTTGCTGATGAAGACAAGCCGATTGAATGTACACAACTTCCTGGAGAGACAATTTATGTTCCGAGTGGATGGTGGCACtgtattttaaatttggaaACAACTATTGCAGTCACACAGAATTTTGTGAATTCTAATAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGTCGTGTAGGTTTGCTTGCTCTTGAAGAAGATGTTCATGAAAATGTCATACAGAACATGTCATGTAATGAAGAAAACTTAAGTTACTCTGATTTGTCAAGGAAAGAGAAAAGATCCAAAACACTGAAAGATGCAGATGATCTATGTTTTGAAAGAGAAATAAGCGGTGCATCTAGAAGCTATAATTTATGGAAAGGTGGATTTTCTTATGATATAAACTTCTTGTCCATGTTTTTGGATAAGGATAGAGATCACTACAGTTCTGAGTGGAGTTCGGGCAACAGCATTGGACAACGAGAACTAAGAGAATGGTTATCCAAGCTTTGGATTCAAAAGCCAGATATGAGAGATCTAATATGGAAGGGAGCATGTATTGCACTAAATGCGGACAAGTGGTTAGAATGCTTGACGAAAATTTGTGCCTTCAACAATCTGTCCCCTCCCACTGATGACGAAAGGCTTCCTGTTGGTACGGGTAGCAATCCTGTTTATCTCGTGGGGAACAATGTTGTTAAGATTTTTGTCGAAGGAGGACTGGAAGCATCACTTTACGGTTTAGGCACAGAGCTAGAGTTTTATACTCTGCTGCTTGAAGCTGACTCCCCTCTCAAGAAGCATATTCCTAGTGTTGTGGCCAGTGGGGTTGTTTATCTTGAAGATGGATCCTATACCAATTTAAGTTGGGATGGAAAAGGAGTTCCCAACGTCATTTTGAAGAGCAATATTGTCACAGACAAATGCGATGTTCATGGTTTCCCATTTGGGGTATGGGGCAAGAAACTGCTAGAGAATAGGAATGCTTCGATTTCGGTGGACGGATCAGTTAGGTTAGCCGATAACTCAAACATATGGCCATATATGATAACTAAGCGATGTGAAGGGAATATGTTTGCCGACTTAAGAGACAGATTATCATGGGAAGATACAACAAACTTGGCCTCCTTCTTGGGAGAGCAAATGCGCCACCTTCATCTTTTGCCACATCcacctttaaataattcatttatatCTGATATTGAACGTGAATTAAGCTGGTCTGATGTGAATGGTTGTGTTGCAAATGTTAATGGTAAATCAAACAATGCAGCAGAATGGGGAATCTTCATCAGAATCTTAACAAAGAAGAGGAAGGATGTCTCAAGCCGTTTAACCAAGTGgGGAGATCCAATTCCTAGCAAACTGATTGAGAAAATTGATGAATATATCCCATCTGATTTATCTAAGCTGCTAAATATAAATGAGAATTTCTCAAGTGGTGCCTCTAAACCTTGCTCCTGGATACACACTGACATTATGGATGATAATATTTACATGGAACCATCATCGGTTTGCTCTACCTCCAGTGGAAATACAGAAGATGCTGCCCAGGCGGACAATGGTTTATTGAGTAACCATGTTGAAATGAAATCCTGGCGTCCTAGTTACATCCTTGATTTCAGTGATCTTTCTATGGGTGATCCTATTTTCGACTTGATACCAATTTATTTAGACGTGTTTAGAGGTGATTCAAATCTCCTTAGGCAATTTTTAGAAAGTTACAAACTTCCTTTTTCTTGCAACATATCTAAGTACGAGTCAGCAGAGGGTGGTCAAAAGTTTAGTCGACTTTCATATGTTGCTATGTGTTATTGTATTTTACACGATGATAATGTCTTGGGAGCTATTTTTAGCATATGGGAAGAACTGAGATCATCAGAGTCATGGGAAGAAGTTGAGATGACAGTGTGGGGAGAGATGAACAATTACAAAGGATTTCTTTGA 3018 0.3913 MESEAHIHTQRDRRTYALGDLRVLPDETICSILERLTPRDAARVACVSSVMYILSNEEPLWMTLCLRGASGFLQYKGSWKKTALHNENIPDEYKEWNRPPLHFDGNDSDIIWLSSVFYIFGKLLVSDTDIYLSVGFNSLFLYRRLYRCHTTLDTFYTVGGNVERIKDISLKDFYSEYDMKKPVMLNGLADTWPARHKWTTDQLLLEYGDVAFKISQRSSKKVSMKFKDYVSYMEVQHDEDPLYIFDEKFGEHAPSLLKDYCVPHLFQEDFFDILDTDKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCILNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALEEDVHENVIQNMSCNEENLSYSDLSRKEKRSKTLKDADDLCFEREISGASRSYNLWKGGFSYDINFLSMFLDKDRDHYSSEWSSGNSIGQRELREWLSKLWIQKPDMRDLIWKGACIALNADKWLECLTKICAFNNLSPPTDDERLPVGTGSNPVYLVGNNVVKIFVEGGLEASLYGLGTELEFYTLLLEADSPLKKHIPSVVASGVVYLEDGSYTNLSWDGKGVPNVILKSNIVTDKCDVHGFPFGVWGKKLLENRNASISVDGSVRLADNSNIWPYMITKRCEGNMFADLRDRLSWEDTTNLASFLGEQMRHLHLLPHPPLNNSFISDIERELSWSDVNGCVANVNGKSNNAAEWGIFIRILTKKRKDVSSRLTKWGDPIPSKLIEKIDEYIPSDLSKLLNINENFSSGASKPCSWIHTDIMDDNIYMEPSSVCSTSSGNTEDAAQADNGLLSNHVEMKSWRPSYILDFSDLSMGDPIFDLIPIYLDVFRGDSNLLRQFLESYKLPFSCNISKYESAEGGQKFSRLSYVAMCYCILHDDNVLGAIFSIWEELRSSESWEEVEMTVWGEMNNYKGFL 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01120 1005 SMART fbox_2 24 64 IPR001810 GO:0005515
Tsu07g01120 1005 SUPERFAMILY F-box domain 16 70 IPR036047 GO:0005515
Tsu07g01120 1005 ProSiteProfiles F-box domain profile. 18 64 IPR001810 GO:0005515
Tsu07g01120 1005 ProSiteProfiles JmjC domain profile. 251 414 IPR003347 -
Tsu07g01120 1005 Gene3D - 7 95 - -
Tsu07g01120 1005 SUPERFAMILY Clavaminate synthase-like 150 408 - -
Tsu07g01120 1005 SMART cupin_9 246 409 IPR003347 -
Tsu07g01120 1005 Pfam Cupin-like domain 180 401 IPR041667 -
Tsu07g01120 1005 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 7 938 - -
Tsu07g01120 1005 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 7 938 - -
Tsu07g01120 1005 Pfam F-box-like 23 67 IPR001810 GO:0005515
Tsu07g01120 1005 Gene3D Cupin 145 399 - -
Tsu07g01120 1005 SUPERFAMILY Protein kinase-like (PK-like) 703 935 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01120 Tsu-Chr7 9568896 9577585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01120 10 1001 Glycosyltransferase AT1G78280 59.241 0.0 1186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu07g01120 Cupin_8 1.6e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01120 - - mtr:MTR_3g099370 1815.05