Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01119 ATGGATAACGAGGGCTTTTGGCAATATGAGTGGGAAAAGCATGGGTCGTGTTCCAATTTGGATCTTGGGAAATACTTGCGTCTCATACAATTTATGTGCACAcgttcaaaatatatatatgaattgcTTGAGGAGGCTGGGATTGTCCCTCACGATATTTCTGATCCATCACAGCCATTACACTTTGTTACGGACTTTGAAGACATCTTGGCCAATAAATTCCATCTTGTCGCAAATGATCAATCATGTATCAGATTTCACTTGAGTTGTTTTGGTGGATATTTATATGCGATAACATTATGCAGGGGAACAGATCCTTTTGAGGACTATGCGTATATAGATTGTCAACCTTCAGAGACTCCACTGTCACTGTGTGATAATGTAGAAGGAGGATTCCAGTATGTTAAATATCCCCCCATGATCATCAAAAGAAAGGAGGTCCGTTCAAGCTGTCTTCTTCGCCTATTGCATACGATCCTAGGTTTTGTTGCTACAATTACATGCAATTATGAGGATGCATTGCAGAATCTTGGCACTGAACTTGATATAATCACAAGGGAGAACGAAAGGTTGCGCATTGAACTCAGCGAACAGGCATCACAAAACCCTGACAATGAAATTGGTAGCATAAAACAGGAGAATGAAAAAATGGAAACCGAGCTCGGGCAGTTGATGGGAGTGAACATTACCTCACTGAATTATGAAGAACTTATGGCCCTTGAGAAAGTCCTTGAAAATGGACTCACTAGTGTCCGTGACAAAAAgGGCAAGAGTTTGGAGGATTTAGATAAAGAATTCTGTATCCTTCTGCACAAGATTTGTGAGGATAAAACTAATAGTGTTGAGGGTTTGGATCTTCAACGTCGAGCAAAGAGTACGTCGGCGAAGAAGCCCCTTGCTCGTAAGGTGACGTCGACGAAGAGTCCCTTTGCTTGTGAGGCGATGTCGACGAAGAGGTCCATTGCTCGAGGGTGTTGTCGTCGAGGGGTTCTTTGCTTGTCGGGACGTCGACGACCCGTTTGCTTAGAAGAAACAAAGCCGAGGATTAAGTATGACGAGATTTTCGATGCGATTTCCCTGGTGCTTGGCGAGATTTGCGAACAGATGGATGTGACTTGGATGGACAAGCCGTTCCACCTTCTCtcgccacgtgtaaaggctattgTGATAGCACTTAAGTGCTCCTCTGTAGGTGTGATGGCCGAGGAACAGACTCCAACGTCGACCTCGAACGTCGATGGAGATGAGTATGACTGGGTGGCCGACGAGCCCCGGACAACTGTTTCAAGATTCTCCCTGAACGGCGGGGATGAAATGTTCAAGACAATTCAGCGTCCCCCTACAGACGATTGGAAAGCCTGTATACCGAACACCAATCGTCGTATTTGCAGCAAATTCCAGTGGGGGTCTTTCCCTATGTACCAGATAGCGTTCGAGCACATGGGCTACAGATTGCCCTTCAGTGACTTCGAAGTCGCGGTCTTTCGATACTTGCATCTTACTCCTTCCCAGTTACACCCCAACTCCCTGGCCTTCATAAGGGCCTTTGAGATGACGGCGGCGTACCTAGGATTTTTGCCGACCATCCCGTTGTTCTTCCATGCTTTTCATCTGCAAAGGTCGAAACCCAAAGGAAATGCTGCGAACAAGTTTGGGTGGGTTTCGTTGAAGCAGAGCGTCAAGCTCTTCGAGATGTTCCTAGAATCTGTTCGGGGTTTTAAGGACAGTTACTTTTTCATCAAGCCCTTGAACTCCGTCTCCTGGCAGAGCATTATTTATCGGGGACCGGCTAAGGATGCCACTGGAGCCCCTTTAATAGGTCCAGATGGTCGTCCCATTCTAGAGGACTATAGCCGCTTCCCTCTGTCGTGGAGGAAAAGCCACTACTTGAAGCCGGCCAGTGACTTTGTATATTCTACGGAGGAACTGACGGTCGAGGAGCTATCCAATTACGAACAGATGAAAGTCTTCGTGGGTAGTTTCCCTTGCAAAACTTATGAGGATGAGGAAGGGAATGCCGTTCTCGACGAATCCGGTGTTCCCTTGACGAAGAAATCATTTATTGATACGAGGAGGCTGCTCGCTTGCAAAAGCGCGGCAGAGATGGAGGCTTGTTTTCGGGAGATGTCATCTATTGCGGCCAAACTTCGTAAATCAAAGGCTGCCAAGGAGAAGAGACAAGCCGCTGTGCTCGGCTCCTCTTCCACAGCTGCACCTTCCCCCGGAGGGAGCGATATGGATAACGCTCGGGGAGGTCCTGTAGTCGTGGATTTGGACGACACAGTTATCAATGCTGACCTTCAATCTCGTCCAGCCAAGTCCGGATCTTGTCAAGAAGTCCCTTGTGCTCTCTCTGATGCGGAGCAAGCTATTATGAACGACATGGGTCCTGAGGCCGTAAAGAACGAGCTCACGGATGCCATGGTCGCCGCGTTCAAGTTAATGGAGATCTCCAGCTTCCTCAATGGTCGGGAATGCAAATACTTGGAGGAGAGGGATGCAGCAAGGGAGGAGGCCGTCCTCGCCAACCAGCAATTGGAGCAGGCCAAAGTTAATCATGCTGCTTATAAGGAGAAGTACACACTCCAAGCAGGTTTGGTGACCAAACTGGCCGAGAAAGAGACGGAAGCTGCTCGTCTGGTTGGGGAGAAGGCGGAGTTGGAGGGGAGGATCAAGGATCTGACGACGGAGAGAGATACCTTGGCGGGGAAGGTGAAAGATTTGGAGAGCAGGCCTTGCTCGAGTGGCACTGCCCCAGATGCTGACGAACTGGTGATCGACCCTAATGGCGAATATAAGGGGTTCACTCGAGCAGCTCTGGTCTCCAGGATTTTCGAGCTCGAAGGAAAGGAACTGGACGTTGCGAAGTCGAGCTTTGACAACGCTGTCGCCCAGTTGATGGTTCTCAACCCTGGCGTGGAGCTGGAGGGTTATAGGGTTGCAGTATATCTGCTACCACTCTCAGCATCAAAACTTGAGTTTGCGGTGCATAAATTGGCCATGGTTACAACGATGGAACTGCAAGAGATGCACCACCATCATGCATTGCCTCTTATTAAGTGGATATGTGGCATTTTGTCTCCTGGAAACGGTTCTCTTATTAGTGGTTGTTCTCAAGAGTTAAGGAAAGACGACGGTAAGCTTGAAATTCATGGTGGTGGTGGCCGGAAAGCAAGATGGAGATGGAGGTGGAGGTGGTGGTCGTCGGTGATGGAGGTGGCGGTGGTCTAG 3231 0.4807 MDNEGFWQYEWEKHGSCSNLDLGKYLRLIQFMCTRSKYIYELLEEAGIVPHDISDPSQPLHFVTDFEDILANKFHLVANDQSCIRFHLSCFGGYLYAITLCRGTDPFEDYAYIDCQPSETPLSLCDNVEGGFQYVKYPPMIIKRKEVRSSCLLRLLHTILGFVATITCNYEDALQNLGTELDIITRENERLRIELSEQASQNPDNEIGSIKQENEKMETELGQLMGVNITSLNYEELMALEKVLENGLTSVRDKKGKSLEDLDKEFCILLHKICEDKTNSVEGLDLQRRAKSTSAKKPLARKVTSTKSPFACEAMSTKRSIARGCCRRGVLCLSGRRRPVCLEETKPRIKYDEIFDAISLVLGEICEQMDVTWMDKPFHLLSPRVKAIVIALKCSSVGVMAEEQTPTSTSNVDGDEYDWVADEPRTTVSRFSLNGGDEMFKTIQRPPTDDWKACIPNTNRRICSKFQWGSFPMYQIAFEHMGYRLPFSDFEVAVFRYLHLTPSQLHPNSLAFIRAFEMTAAYLGFLPTIPLFFHAFHLQRSKPKGNAANKFGWVSLKQSVKLFEMFLESVRGFKDSYFFIKPLNSVSWQSIIYRGPAKDATGAPLIGPDGRPILEDYSRFPLSWRKSHYLKPASDFVYSTEELTVEELSNYEQMKVFVGSFPCKTYEDEEGNAVLDESGVPLTKKSFIDTRRLLACKSAAEMEACFREMSSIAAKLRKSKAAKEKRQAAVLGSSSTAAPSPGGSDMDNARGGPVVVDLDDTVINADLQSRPAKSGSCQEVPCALSDAEQAIMNDMGPEAVKNELTDAMVAAFKLMEISSFLNGRECKYLEERDAAREEAVLANQQLEQAKVNHAAYKEKYTLQAGLVTKLAEKETEAARLVGEKAELEGRIKDLTTERDTLAGKVKDLESRPCSSGTAPDADELVIDPNGEYKGFTRAALVSRIFELEGKELDVAKSSFDNAVAQLMVLNPGVELEGYRVAVYLLPLSASKLEFAVHKLAMVTTMELQEMHHHHALPLIKWICGILSPGNGSLISGCSQELRKDDGKLEIHGGGGRKARWRWRWRWWSSVMEVAVV 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01119 1076 Pfam Putative gypsy type transposon 478 539 - -
Tsu07g01119 1076 Gene3D - 1 139 IPR036430 GO:0003723|GO:0033897
Tsu07g01119 1076 ProSiteProfiles K-box domain profile. 200 287 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu07g01119 1076 PANTHER OS06G0165300 PROTEIN 449 630 - -
Tsu07g01119 1076 Pfam Ribonuclease T2 family 2 102 IPR001568 GO:0003723|GO:0033897
Tsu07g01119 1076 Coils Coil 174 201 - -
Tsu07g01119 1076 Pfam K-box region 197 260 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu07g01119 1076 PANTHER MEIOSIS-SPECIFIC PROTEIN ASY2-RELATED 449 630 - -
Tsu07g01119 1076 MobiDBLite consensus disorder prediction 725 753 - -
Tsu07g01119 1076 SUPERFAMILY Ribonuclease Rh-like 2 117 IPR036430 GO:0003723|GO:0033897
Tsu07g01119 1076 Coils Coil 870 911 - -
Tsu07g01119 1076 Coils Coil 832 859 - -
Tsu07g01119 1076 ProSitePatterns Ribonuclease T2 family histidine active site 2. 6 17 IPR033130 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01119 Tsu-Chr7 9559101 9567467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01119 176 255 MADS-box Gene Family AT5G20240 38.750 2.94e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01119 - K01166 mtr:MTR_0034s0130 174.866