Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01099 ATGGCGCTACTACGTACTATTCCATGTTCAACTCAATTATCCACAAAACAACACTTCGACtttgaaaataataagaaacattCTTCTACAAATaccttcttttcttcttcttcctttcacTCTCCTCTTCGTTTATCCATTTCTCATCATactccaacaacaacaacaatcctTATCAGAACCAAACAACACTCTAATTCTACTCTCAGATTCACCTCTACTTCAGAACAAGTAACCACAGTAGAACAACATGACCCAgaaaaagaacaagaacaacTGTCTCCTTCTAGGTTGCTTGTTCAGAATTTTCCATGGTCAAGTACTGCCGAAGATGTTCGTACTTTGTTTGAGAAGTACGGAAAAGTTGTTGATATTGAGCTTTCAATGTATAATAAGTACAGAAACAGGGGTTTAGCTTTTGTGGAAATGGGTTCTCCTGAAGAAGCTCTTGCTGCTCTCAATGCTCTTCAATCGTATGAGTTTGAGGGCCGTGTAATAAATGTCAAACATGCTCGGCCTAAAAAGGAGAGAGCACCGAGACCAGTGGAACGAAAGCCGATAACATTTAGCTTGTTTGTTGCAAATTTGTCCTATGAAACAAGGAATAAAGATCTCAGAGAGTTTTTTGATTCGGGAACTGGTAAAGTTGTTTCTGCAGATGTTGTATTTCTCGAGAATCCGAAAAGGCCAGCTGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCTGATGAAGCTCTTTCCGAGTTTCAAGGAAAGATTTTGTTGGGAAGGCCAGTTAGGGTTGCACCTGGTAAGCGATTTGTTCAACCGGCAGAGGAGAGTGTAGGATCCAAAGACACATCTTCTGAGTCGAGCGTCAATGAGGAGGCAGTAGTTAACAAAGCTGATTGA 897 0.3712 MALLRTIPCSTQLSTKQHFDFENNKKHSSTNTFFSSSSFHSPLRLSISHHTPTTTTILIRTKQHSNSTLRFTSTSEQVTTVEQHDPEKEQEQLSPSRLLVQNFPWSSTAEDVRTLFEKYGKVVDIELSMYNKYRNRGLAFVEMGSPEEALAALNALQSYEFEGRVINVKHARPKKERAPRPVERKPITFSLFVANLSYETRNKDLREFFDSGTGKVVSADVVFLENPKRPAGYGFVSFKSKKEADEALSEFQGKILLGRPVRVAPGKRFVQPAEESVGSKDTSSESSVNEEAVVNKAD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01099 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723
Tsu07g01099 298 MobiDBLite consensus disorder prediction 72 93 - -
Tsu07g01099 298 CDD RRM_SF 191 263 - -
Tsu07g01099 298 MobiDBLite consensus disorder prediction 268 298 - -
Tsu07g01099 298 PANTHER OS08G0483200 PROTEIN 1 293 - -
Tsu07g01099 298 SUPERFAMILY RNA-binding domain, RBD 188 268 IPR035979 GO:0003676
Tsu07g01099 298 MobiDBLite consensus disorder prediction 276 291 - -
Tsu07g01099 298 SUPERFAMILY RNA-binding domain, RBD 74 182 IPR035979 GO:0003676
Tsu07g01099 298 SMART rrm1_1 97 169 IPR000504 GO:0003723
Tsu07g01099 298 SMART rrm1_1 190 264 IPR000504 GO:0003723
Tsu07g01099 298 Gene3D - 59 177 IPR012677 -
Tsu07g01099 298 Gene3D - 178 272 IPR012677 -
Tsu07g01099 298 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 293 - -
Tsu07g01099 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Tsu07g01099 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 261 IPR000504 GO:0003723
Tsu07g01099 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01099 Tsu-Chr7 9366045 9368931 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01099 98 268 Eukaryotic Initiation Factors Gene Family AT3G16380 30.000 2.95e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01099 - - gmx:100790439 303.138