Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01096 ATGAACACTTTCCCACTCAAATCACACTTCAATTTCAATCATGCTTTTCCCTACCTCTTCCTCCTGCTCctcctcatcttcatcatcGTTCTTCCACCGCCGGCAACAGCACAGATTCCGAATGCAAAACCACCGCCACCGCCGTCGGACAGAATCACCAAGCTCAAATTCGACAAATCCATGGCAATTGTCTTAGTAATCTTAGTCGTCGTCTTCTTCATCCTCGGTTTTCTCTCCGTCTACACTCGTCAGTGTGCAGAACAGAGAATTAGAGGAAGATTCGATTTATCAATTCCGATCGTCGGAAGTAACCGGAGACACCGTGGACTTGACTCAGAAATCATCGAAACGTTTCCGACGTTTGTTTATTCCACCGTGAAAGGTCATAAAATTGGAAGAGCCGCGCTAGAATGCGCCGTTTGTTTAAACGAATTTCAAGACGATGAAACGCTGCGTTTGATTCCTAATTGTTGCCACGTGTTTCATCCTGAATGTATTGATGCTTGGCTTGTTAATCACTCCACGTGTCCCGTTTGTCGCGCCAATTTAATTCCAAAACCCGGATCCAATTTCGTTTCAATTCAGATTCCGGATTTATATACATCCGATTCAGATGAcccgaaccgaaccaattcgGTTGGCGAAAACGCGGGTAATAGAGATACCGTTATTATTACATCTCGTTCTCCTTCTCCTAAAGTGAATTATTCAGTTACACCGAACCGGGCTCGACCGGTTCGATCAAGTTCAACCGGGTTTAAAATTGGTAACTGGTTACCATTTCCACGGTCACATTCAACGGGTCATTCATTGGTTCAAGAAGGGGAGAGTCATGAGCGGTTCACGTTGAGATTACCGGAGGAAGTGAGGAACCGGTTGATGGGTTCAACGCCGAGTTGTGGTGTTAGTTTTACTAGAGAGGGAAGTGGGAGGAGAGGTTATAGAACAAGGAGTGTGGGAAGTAGTACTCACCGGTCGGACCGGAGAGGTTTTTCTTGGACTCCGCCGTTTATGGGTCGAACCGGTTCGAGTTGGGCGAAGAATAAGTCATTGGATGATGTGGGAGAACGGTCTTCTGATCGCTTGTTTGAAGGTAAGGAGTTAGTTGGTTAG 1113 0.4447 MNTFPLKSHFNFNHAFPYLFLLLLLIFIIVLPPPATAQIPNAKPPPPPSDRITKLKFDKSMAIVLVILVVVFFILGFLSVYTRQCAEQRIRGRFDLSIPIVGSNRRHRGLDSEIIETFPTFVYSTVKGHKIGRAALECAVCLNEFQDDETLRLIPNCCHVFHPECIDAWLVNHSTCPVCRANLIPKPGSNFVSIQIPDLYTSDSDDPNRTNSVGENAGNRDTVIITSRSPSPKVNYSVTPNRARPVRSSSTGFKIGNWLPFPRSHSTGHSLVQEGESHERFTLRLPEEVRNRLMGSTPSCGVSFTREGSGRRGYRTRSVGSSTHRSDRRGFSWTPPFMGRTGSSWAKNKSLDDVGERSSDRLFEGKELVG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01096 370 MobiDBLite consensus disorder prediction 350 370 - -
Tsu07g01096 370 Pfam Ring finger domain 137 180 IPR001841 -
Tsu07g01096 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 185 IPR013083 -
Tsu07g01096 370 PANTHER RING FINGER DOMAIN-CONTAINING 18 305 - -
Tsu07g01096 370 PANTHER RING-H2 FINGER PROTEIN ATL11 18 305 - -
Tsu07g01096 370 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Tsu07g01096 370 MobiDBLite consensus disorder prediction 202 249 - -
Tsu07g01096 370 MobiDBLite consensus disorder prediction 315 329 - -
Tsu07g01096 370 SMART ring_2 138 179 IPR001841 -
Tsu07g01096 370 MobiDBLite consensus disorder prediction 294 370 - -
Tsu07g01096 370 CDD RING-H2_PA-TM-RING 137 180 - -
Tsu07g01096 370 SUPERFAMILY RING/U-box 132 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01096 Tsu-Chr7 9323239 9324351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01096 9 341 Rapid Response to Elicitors AT3G05200 38.506 1.46e-64 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01096 K10664 - gmx:100807828 360.918