Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01065 ATGTACAACTCTATGAACATCTCCGATCAGATCAAGAACAACGATGAAaccgacaacaacaacaacaacaatcacatCCATTACGATTCACATAATCTCGAAGACGCTTCTGGAGAAGGTGAAGGAAATATCCAAGACGTTACACTCGATGATGTTTATGTTTCCGGTGACGGAAACCACCCTGATATGTCTATTCAACGATTCGATGATTCTTCTCAGCTCACGCTTTCTTTTCGTGGCCAAGTTTATGTCTTTGATTCTGTTACCCCCGAAAAAGTTCAATCGGTTTTGTTACTGTTAGGAGGATGTGAATTATCTTCGGGTTCGCAAGGTTTGGATACATCGCCTCTTAATCAAAGgAGTGGTACTGAATTTCCTACAAGATGTAGTCAGCCACAGCGAGCAGCATCGTTGATTAGGTTCCGTCAGAAGAGGAAAGAGCGGAACTTTGATAAGAAAGTTAGATATGAAGTGCGTCAAGAAGTTGCACTAAGGATGCAACGTAGTAAGGGTCAATTTACGTCATCTAAGAAACAAGATGGAGCTAACAATTATGGCTCTGATCCAGAGTCAGGGCAGGATATGATTCAATCAGAAACCTCATGCACACATTGTGGAATCAGTTCAAAATCCACCCCTATGATGCGAAGGGGGCCATCTGGCCCAAGGACACTTTGTAATGCTTGTGGGCTGTTTTGGGCAAATAGGGGTACTCTGAGGGATCTATCTACTTCTAGGAGAAATCACGAGCAACACACTATTGTAACGCCTGAGCAGGGTACTATGAGGGATCTTTCTAATTCTAAGAGAAACCACGAACCGCACACTCTTCCACCACCTGAGCAGGTTGGCGAGGGCAATGACTTGAACTGCGAGACTGCTCTTCCTGCGCATAACGATTCTGTTGATGATAAAACAGCTTTGGTATCCGATCAATGA 939 0.4249 MYNSMNISDQIKNNDETDNNNNNNHIHYDSHNLEDASGEGEGNIQDVTLDDVYVSGDGNHPDMSIQRFDDSSQLTLSFRGQVYVFDSVTPEKVQSVLLLLGGCELSSGSQGLDTSPLNQRSGTEFPTRCSQPQRAASLIRFRQKRKERNFDKKVRYEVRQEVALRMQRSKGQFTSSKKQDGANNYGSDPESGQDMIQSETSCTHCGISSKSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSTSRRNHEQHTIVTPEQGTMRDLSNSKRNHEPHTLPPPEQVGEGNDLNCETALPAHNDSVDDKTALVSDQ 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01065 312 MobiDBLite consensus disorder prediction 243 312 - -
Tsu07g01065 312 Pfam tify domain 71 101 IPR010399 -
Tsu07g01065 312 PANTHER GATA TRANSCRIPTION FACTOR 28 9 272 IPR045280 GO:0006355
Tsu07g01065 312 CDD ZnF_GATA 201 243 IPR000679 GO:0006355|GO:0043565
Tsu07g01065 312 MobiDBLite consensus disorder prediction 168 219 - -
Tsu07g01065 312 Gene3D - 193 254 IPR013088 GO:0006355|GO:0008270
Tsu07g01065 312 ProSitePatterns GATA-type zinc finger domain. 202 229 IPR000679 GO:0006355|GO:0043565
Tsu07g01065 312 SMART tify_2 67 102 IPR010399 -
Tsu07g01065 312 ProSiteProfiles CCT domain profile. 134 176 IPR010402 GO:0005515
Tsu07g01065 312 MobiDBLite consensus disorder prediction 1 41 - -
Tsu07g01065 312 MobiDBLite consensus disorder prediction 109 129 - -
Tsu07g01065 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 255 - -
Tsu07g01065 312 MobiDBLite consensus disorder prediction 168 215 - -
Tsu07g01065 312 ProSiteProfiles GATA-type zinc finger domain profile. 196 252 IPR000679 GO:0006355|GO:0043565
Tsu07g01065 312 SMART GATA_3 196 249 IPR000679 GO:0006355|GO:0043565
Tsu07g01065 312 MobiDBLite consensus disorder prediction 1 27 - -
Tsu07g01065 312 PANTHER GATA TRANSCRIPTION FACTOR 25 9 272 - -
Tsu07g01065 312 Pfam CCT motif 134 176 IPR010402 GO:0005515
Tsu07g01065 312 ProSiteProfiles Tify domain profile. 67 102 IPR010399 -
Tsu07g01065 312 Pfam GATA zinc finger 202 238 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01065 Tsu-Chr7 8917912 8922910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01065 71 310 Tify Gene Family AT4G24470 54.878 1.91e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu07g01065 CCT 9.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01065 - - lja:Lj0g3v0164269.1 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01065 07 8917912 8922910 Tsu07g01065 07 8917912 8922910 ECH
Tsu05g02587 05 35238662 35244596 Tsu07g01065 07 8917912 8922910 PCT