Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01062 ATGCCTCATAGAGCAACTTACATTTTCCCGCGTCATTTTCCAGAGCGAGGATTGGATGAATCATCCAAAAAGCTATTAGATCACGATAAGGACAATATCGTCAATTCAATTAAATCTGAAAATGAAAGTGACACGCAAACCAAAAAGTCACATTCGTTTTCTACTCCTCCATCAACCAAACACAACGACGTCGTTTTCTCTTCCGGCAAACACTCACATTCCTCCGGCGATAACAAACTCCGAATCAAGCAAAAGCAAGTAACGGCTTTCTGCGATTGGTTTAtcgacaaaaaaagaaatcactCCGGTCACCAGAATTATCATCACTTCCGCCGCCGATCGTCAATCTCCGATGATGATCACGATTTTTATCTTTCTCAGCCGGAGACAGCCGTTAAAGACACTGCAATCGATCGGAATTTTGATCGGCAGGTTTCGCTTCCGAGGTTATCAAGTGATAGTAGCTACGCAGGGAGTTTGTTTTCCAGTGACATTAAGGAGGAAGCGCCGTTGTCTCAAGTCTCCACCATTACCACTGCCACAGTTAGGAGGCAgaaggaggaagaagaaaacGAAGACGCGTTGGTTAAGAAGTGTAAAGAAAGCTACATCTTGCAGCTTATGTTAGCGAAGAGGTTGGCTTCTTTGGCAAGTCTCGTAACGGAACCGTTTCTCACTCATGCCACCGAAACTTGGGATGCTGAATCTGTTTCTTATCGTCTTTGGGTGAGTGGTTGTTTGTCGTATACGGACAAGATAACTGATGGATTTTACAACATATTGGGGATGAATCCATATCTGTGGGTGATGTGCAATGATGAGGAGGAAGGCAAGCGGATACCTAATTTGATGGCACTTAAAGCCATTGAACCAGGCGAGACATCTATGGAGGTGGTGCTTGTCGATAGAGACGGAGACTCTCGTTTGAAGATGCTTCATGATAAAGCTCAGGAGTTGTATTGTTCTTATGGGAACACCTTGGTGTTTGTCGAACAACTAGGGAAACTTGTTGCCATACATATGGGAGGCATGTTCCCGGTGGAGGAAGGAGATCTCCACAAATGCTGGAAGTTGGTTAGTAAGAGGTTGAGAAATTTTCACCAATGTGTAGTGCTTCCCATTGGTAGTGTATCTTCTGGGCTTTGTAGGCATCGAGCAATTCTCTTCAAGAGATTGGCGGATTACATAGGTTTGCCTTGTCGCATAGCTCGTGGTTGCAAGTATTGTGCTGCAGATCATAGATCCTCTTGCCTAGTCAAGATCAAAGATGACAAGCAGCTTTTGAGGGAATACGTAGTCGACCTTGTTGGGGAACCAGGAAATGTACATGGTCCAGATTCCTCGATCAATGGAGCATATGCTTCTTTTATTCCTTCGCCGTtacaaatttctcattttatggAATTACAATCTCCCTATatggatgatgaagaaagttcTCAACCACTTATTAGTTTCGACCAAAATTCTTTTAATCCTGAAACTCATCCTTATTCAGGTTGTGGACAGAATGATCAACAAGTTATGGACGCTGATTTGTTGAAAGGTCATCAGGGCTCTGTCCGTGCTTCAGTTGATCAAACATGTGAAATAACCAAACCAAATCTaatttcttttggtttaaaagagaATGACGAGGAATGCGCAGTTCTAGGTTCAATTTTGCCTACCATTCATGAAAATGTTGCTAAAGTTTTTCCTGCCACCGAATCATCATTACATGAATATCCAAGGTTTAGTGAAGATACAGTTATGGTACAAGAAACTTCCAATAATGAGATCATCGTAACAGGAGGTTCTGTGGTAAAAAGTATTTTCAAGCAATGTATACTTAGTTCCTCCTGCCAATCAGAATTCAAGCAGGTAGACAATAGAATTGAAAACCAGGACTATTTACCTGATGGGAGTATTCCGAGATATGTGAATCTTGAACCATCGCTTGCAATGGACTGGCTTGAGATATCATGGGATGACTTACGGATTAAAGAGCGTGTTGGTGCTGGCTCATTTGGGACTGTGCACCGTGCTGAATGGCATGGATCAgATGTTGCAGTCAAGGTTTTAACAGTTCAGGATTTCCATGATGATCAGTTGAAGGAGTTTTTGAGAGAGGTTGCAATAATGAAACGTGTTCGTCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACGACAAGCCCAAATCTATCAATAGTGACAGAGTATTTGCCGAGGGGTAGTTTGTACCGCCTGATACATAGGCCAGCATCTGGTGAAATTTTGGATAGTAGGAGAAGATTACGGATGGCTTTGGATGTGGCTAAAGGAATGAATTATCTCCATTGTCTGAAACCTCCAATCGTGCACTGGGATCTCAAATCACCAAACTTGTTAGTGGACAAAAATTGGACTGTGAAGGTTTGTGATTTTGGATTGTCCAGATTTAAGGCAAACACTTTCATACCCTCAAAATCTGTTGCCGGAACAccTGAGTGGATGGCCCCAGAATTTCTTCGCGGAGAACCTTCAGATGAGAAATCCGACATATTCAGTTTTGGAGTCATCCTGTGGGAGCTTGTGACCATGCAACAACCATGGAGTGGACTTAACCCTCCCCAGGTGGTCGGAGCTGTTGCTTTCCAGAATAGGAAGCTTGCTATCCCTCCAAACATCTCCCCAGCATTGGCCTCCCTCATGGAATCTTGTTGGGCTGATGATCCTGCTCAGCGCCCATCTTTCGGTAACATAATTGACTCACTAAAGAAGCTGCTGAAGTCTCCAGCAGAGGTGATAAAGATGGGTGATACGCACAAGCCATAA 2799 0.4205 MPHRATYIFPRHFPERGLDESSKKLLDHDKDNIVNSIKSENESDTQTKKSHSFSTPPSTKHNDVVFSSGKHSHSSGDNKLRIKQKQVTAFCDWFIDKKRNHSGHQNYHHFRRRSSISDDDHDFYLSQPETAVKDTAIDRNFDRQVSLPRLSSDSSYAGSLFSSDIKEEAPLSQVSTITTATVRRQKEEEENEDALVKKCKESYILQLMLAKRLASLASLVTEPFLTHATETWDAESVSYRLWVSGCLSYTDKITDGFYNILGMNPYLWVMCNDEEEGKRIPNLMALKAIEPGETSMEVVLVDRDGDSRLKMLHDKAQELYCSYGNTLVFVEQLGKLVAIHMGGMFPVEEGDLHKCWKLVSKRLRNFHQCVVLPIGSVSSGLCRHRAILFKRLADYIGLPCRIARGCKYCAADHRSSCLVKIKDDKQLLREYVVDLVGEPGNVHGPDSSINGAYASFIPSPLQISHFMELQSPYMDDEESSQPLISFDQNSFNPETHPYSGCGQNDQQVMDADLLKGHQGSVRASVDQTCEITKPNLISFGLKENDEECAVLGSILPTIHENVAKVFPATESSLHEYPRFSEDTVMVQETSNNEIIVTGGSVVKSIFKQCILSSSCQSEFKQVDNRIENQDYLPDGSIPRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTTSPNLSIVTEYLPRGSLYRLIHRPASGEILDSRRRLRMALDVAKGMNYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSDEKSDIFSFGVILWELVTMQQPWSGLNPPQVVGAVAFQNRKLAIPPNISPALASLMESCWADDPAQRPSFGNIIDSLKKLLKSPAEVIKMGDTHKP 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01062 932 CDD STKc_MAP3K-like 665 913 - -
Tsu07g01062 932 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 172 927 - -
Tsu07g01062 932 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 172 927 - -
Tsu07g01062 932 SMART serkin_6 659 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g01062 932 PRINTS Tyrosine kinase catalytic domain signature 733 746 IPR001245 GO:0004672|GO:0006468
Tsu07g01062 932 PRINTS Tyrosine kinase catalytic domain signature 840 862 IPR001245 GO:0004672|GO:0006468
Tsu07g01062 932 PRINTS Tyrosine kinase catalytic domain signature 774 792 IPR001245 GO:0004672|GO:0006468
Tsu07g01062 932 PRINTS Tyrosine kinase catalytic domain signature 884 906 IPR001245 GO:0004672|GO:0006468
Tsu07g01062 932 Gene3D Phosphorylase Kinase; domain 1 652 736 - -
Tsu07g01062 932 MobiDBLite consensus disorder prediction 37 78 - -
Tsu07g01062 932 SUPERFAMILY Protein kinase-like (PK-like) 634 912 IPR011009 -
Tsu07g01062 932 MobiDBLite consensus disorder prediction 48 73 - -
Tsu07g01062 932 ProSiteProfiles Protein kinase domain profile. 659 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu07g01062 932 Pfam Protein tyrosine and serine/threonine kinase 659 913 IPR001245 GO:0004672|GO:0006468
Tsu07g01062 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Tsu07g01062 932 Gene3D Transferase(Phosphotransferase) domain 1 738 925 - -
Tsu07g01062 932 ProSitePatterns Protein kinases ATP-binding region signature. 665 686 IPR017441 GO:0005524
Tsu07g01062 932 Pfam Ethylene-responsive protein kinase Le-CTR1 234 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01062 Tsu-Chr7 8870389 8876868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01062 1 927 MAP Kinase Kinase Kinase AT4G24480 54.352 0.0 1015
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Tsu07g01062 PK_Tyr_Ser-Thr 2.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01062 - - gmx:100808435 1392.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01062 07 8870389 8876868 Tsu07g01062 07 8870389 8876868 ECH
Tsu05g02585 05 35201284 35209575 Tsu07g01062 07 8870389 8876868 PCT
Tsu05g03780 05 49082121 49087894 Tsu07g01062 07 8870389 8876868 PCT