Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01043 ATGAACACAAGCAAAGCCGAAGCAGAACGGTTACTAGAGATCGGAGAAGAACTTTTACAAAAACGCGATCTAAAAGGTTCAAGAGAAATCGCAATTCTCGTTCAAGAAACCGAACCACTTCTAGAAGGTTCCGATCAGATCTTAGCAATTGTCGATGTTCTCGAAGCAGCAGAAAAGCCATTGAATCTCAACAATCATCATCTCGATTGGTACGCAATTCTTCAAATCAATCGTAATTCACAAGATCTTAATCTTATCAAGAAACAGTATCGTACTCTcgctcttcttcttcatcctgATAAaaatcctttttctttttctgaacTTGCTTTCAAACTTGTTTCTGATGCTTGGGCCGTTTTATCTGACCCGGCCCAAAAAGCCCAATATGATAAAGGATTTCAATTTGAAAGTTTAGAGAATGGGAATGGGAATGGAAATGTTAGTTTTTGGACTGCATGTCCTTATTGTTATCATTTGTATGAATATTCTAGGGTTTATGAAGGTTATTGTTTGATGTGTCAGAAATGTGATAAATCTTTTCATGGTGTTTCAATTGGTTCTCTTCCACCGATTTTGCCGGGACAAGAAGCTTATCAGGTTTCTTGGGGAATGTTTCCGATgggttttgtttttgaaagtttAGAAAATGGTGGTGGTGATTCTGGTACGAGGAAGTGA 681 0.3465 MNTSKAEAERLLEIGEELLQKRDLKGSREIAILVQETEPLLEGSDQILAIVDVLEAAEKPLNLNNHHLDWYAILQINRNSQDLNLIKKQYRTLALLLHPDKNPFSFSELAFKLVSDAWAVLSDPAQKAQYDKGFQFESLENGNGNGNVSFWTACPYCYHLYEYSRVYEGYCLMCQKCDKSFHGVSIGSLPPILPGQEAYQVSWGMFPMGFVFESLENGGGDSGTRK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01043 226 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Tsu07g01043 226 Pfam DnaJ domain 69 131 IPR001623 -
Tsu07g01043 226 Gene3D DnaJ domain 55 149 IPR036869 -
Tsu07g01043 226 SUPERFAMILY Chaperone J-domain 67 154 IPR036869 -
Tsu07g01043 226 PRINTS DnaJ domain signature 90 105 IPR001623 -
Tsu07g01043 226 PRINTS DnaJ domain signature 106 126 IPR001623 -
Tsu07g01043 226 PRINTS DnaJ domain signature 71 89 IPR001623 -
Tsu07g01043 226 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 1 213 - -
Tsu07g01043 226 CDD DnaJ 69 123 IPR001623 -
Tsu07g01043 226 ProSiteProfiles dnaJ domain profile. 69 134 IPR001623 -
Tsu07g01043 226 SMART dnaj_3 68 126 IPR001623 -
Tsu07g01043 226 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01043 Tsu-Chr7 8722407 8723336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01043 2 211 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 54.018 1.60e-78 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01043 - - mtr:MTR_3g100330 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02569 05 34964214 34965749 Tsu07g01043 07 8722407 8723336 PCT