Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01042 ATGCAAGGGGATAGAAGGAATGCCGACGATCCTTACAACTCAAACTGTCTAAGAAGCTGTGGTCAACCATCAACTGCAAGTATAATGACTGAAAATACCGCACCTAATATAGTATACAGGAGAAAAGCTAAACAAATGAAAGGGGATAGAAGGAATGCTGAGGATCCTTACAACTCAAACTGTCTAAGAAGCTGCGTTCAACCATCAACTGCAAGTATAATGACTGAAAACACCGCACTTAATCTAGTATACAAGAGAAAAAAGCTACACAAGGGATCAATTGCCCCTCATTTCAAGCCAGGACCAACTGATATGCAGACAAGTGCCAATTTCCCTTCAGTCATAAGTTCCTCTTTGCATTTATCATCAGCTGAGGATCAAACAGCTGCTTTTCCAGTTAAGCATCAAATTGAAATGGTCAAAGATCATATTCTGCCTTCTGTCTTTCTTGATGGAGTAGCCAAAGATACCACACAGAAAAAATTAGGTATTGACAGTGTAAATGATAGTTGCTCATCTTCGAAGTCAAATATGGTACTTGTTTCAGATTCCATAGAAACTGAGATGGATGAAACTGGCGAATGCTCCTCTTCCAGTGTCATAGCAATGGATATCACAAGAGAAGATTTAACAGAGAAGGATTTCTgcattaatattttaagaagCCATGGACTTCTCAGAGGAGATACTCTTACAGATAATGTGGTTTCTGTTACCACTGATAATAATTGCTGTTCCAGGTCATGCAAAATATGTGGTCAATTGGAAAGTTCATTGAAAATGCTTTTATGTGATCATTGTGAAGATTCATATCATCCATCTTGCTACAGTTCACGCTTGAAAAAAACACGAATAGATGAGTGGTTTTGTCATTCATGTCTTGATGAAAGGCATAAAATTCTTAAGGATACAATTATCAAACCACCAAGTATCAACAGTGAAAAGAGGGAATGTAGAACTACCCCGGTTAAGGATGAAATGAACcccatattttttatgttgagAGATACTGAGCCATATACAACTGATGTGCGAGTTGGTAAAGGTTTTCAAGCAACAGTACTTGACTGGTCAGGCCCTGTAAAAAGTGATGAAGACGACTTTCCTGAACCATTGGAAATTAATTCTTCAGAGTTTTATAGACTGCAGGAAGAGAATATAAGAAATCCAACTAGACTCAGTTCCATTGGCAATTGGCTTCAATGTCGTGAGGTTATAGATAAAACTAGTGGAACAATATGTGGGAAATGGCGCAGGGCTCCACTATTTGAAGTTCAAATCGATTACTGGGAATGCTTCTGTGCTGTTCATTGGGATCCATTGCATGCTGATTGTGCTGTACCTCAGGAGGTGGAAACAGATGAAGTTTTGAAGCAACTGAAGTATATAGAAATGTTGAGGCCGCGACTTGCTGCTAGACAGAAAATCAGACTGCACAAAGAATGA 1446 0.3811 MQGDRRNADDPYNSNCLRSCGQPSTASIMTENTAPNIVYRRKAKQMKGDRRNAEDPYNSNCLRSCVQPSTASIMTENTALNLVYKRKKLHKGSIAPHFKPGPTDMQTSANFPSVISSSLHLSSAEDQTAAFPVKHQIEMVKDHILPSVFLDGVAKDTTQKKLGIDSVNDSCSSSKSNMVLVSDSIETEMDETGECSSSSVIAMDITREDLTEKDFCINILRSHGLLRGDTLTDNVVSVTTDNNCCSRSCKICGQLESSLKMLLCDHCEDSYHPSCYSSRLKKTRIDEWFCHSCLDERHKILKDTIIKPPSINSEKRECRTTPVKDEMNPIFFMLRDTEPYTTDVRVGKGFQATVLDWSGPVKSDEDDFPEPLEINSSEFYRLQEENIRNPTRLSSIGNWLQCREVIDKTSGTICGKWRRAPLFEVQIDYWECFCAVHWDPLHADCAVPQEVETDEVLKQLKYIEMLRPRLAARQKIRLHKE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01042 481 ProSiteProfiles Zinc finger CW-type profile. 393 453 IPR011124 GO:0008270
Tsu07g01042 481 ProSitePatterns Zinc finger PHD-type signature. 249 293 IPR019786 -
Tsu07g01042 481 Gene3D - 397 462 - -
Tsu07g01042 481 PANTHER REMODELING AND SPACING FACTOR 1 56 475 - -
Tsu07g01042 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 314 IPR013083 -
Tsu07g01042 481 Pfam PHD-finger 249 294 IPR019787 -
Tsu07g01042 481 SUPERFAMILY FYVE/PHD zinc finger 247 299 IPR011011 -
Tsu07g01042 481 ProSiteProfiles Zinc finger PHD-type profile. 246 296 IPR019787 -
Tsu07g01042 481 SMART PHD_3 248 294 IPR001965 -
Tsu07g01042 481 PANTHER HISTONE ACETYLTRANSFERASE 56 475 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu07g01042 PHD 4.2e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01042 - - gmx:100813057 627.091