Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01040 ATGCTGACACACAACCACCGCCATCACATGGCATCTTCATTCTTCACCATCACTAATCTcattttactactattattactCCAACAACACTCCATAACCGTTTTTGTTGCTGCATTTACACAAAACAATAACACAGAAACCACTCCAGTAACTCCACCCCCAACTCCCATTCCCGAAGACGCAACCACCATTTCTCAACACACTTTCACACCATTCAAACCAAGCGTAGCTATTGTAATCAGTGTTTTCACCGTACTCTTTTCAGTTAcctttcttctccttctctacATCAAACATATCAACAACACCACCAACGCCGAAACAATTAACATCGAAAGTAGTAGCTACGGCGGAAGCGGCGGCGGAGGAATTTCCTCTTTCAGCGGCGGAAGAAAAAACTCCGGCGTTGACCGTTCAGTAGTAGAATCGTTACCGATTTTCAAATTCGGATCACTTACAGGCCAAAAAGAAGGTCTAGATTGCGCAGTTTGTCTCTCGAAATTCGAATCCTCAGAAGTTTTACGGTTATTACCGAAATGTAAACACGCTTTTCACGTTGAATGTGTTGATACTTGGTTAGATGCACATTCAACTTGTCCTCTTTGTCGTTACAGAGTCGATCCTGAAGATATACTTCTCGTAATGGAAAATTCATCATcgtcattatcatcatcacgcGATTCACGCCAGATTCAGAATCAAAAAgaacaacaagaagaagatgaatgtattgttgaaattgaaagagGAGCAATGACGAGAAACGAAATTGCAGAGTATTATCGAAAGAGACATTCATCAGTAGGAGAAAAAGAATGGGAACGAGAACGAGAAAGAAGGAAAACGGCGTCGTTTAGATGGTCATTAGATAGTTCTAGAAAGAAGAACGATAGTTCAGTTGGAATTGGGCTTGGTTGTTTTGTTGGGCCTGGGCCTAGAAAAGATGGAATGTTGTTAacgaaagaagagaaagaaattaCAGAGAGGAGTAGCGTGGAGCGGAGAAGAAGGTTAGAGCATAGGATTATTGTGTCACCTTCAGTGACAAATATAAGAAGTGGGCTCCACAAGAATCAACGGTGGAGTGATGTACAACCGTGTGATTTGCTGTATCTAACTTCAGAGATGATGATAATGAGTGAGTCACGGAgagtgatgaagaagaagagaaatagtaatGATAGTTGTTGGAATGGCAGAGGAGAAATTAATTCGAGAAGTGTGTCTGAAATCACGGGATTCAGTAGGTTTCAAAGCAACAATACTACAAAGCAATAA 1278 0.3685 MLTHNHRHHMASSFFTITNLILLLLLLQQHSITVFVAAFTQNNNTETTPVTPPPTPIPEDATTISQHTFTPFKPSVAIVISVFTVLFSVTFLLLLYIKHINNTTNAETINIESSSYGGSGGGGISSFSGGRKNSGVDRSVVESLPIFKFGSLTGQKEGLDCAVCLSKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVMENSSSSLSSSRDSRQIQNQKEQQEEDECIVEIERGAMTRNEIAEYYRKRHSSVGEKEWERERERRKTASFRWSLDSSRKKNDSSVGIGLGCFVGPGPRKDGMLLTKEEKEITERSSVERRRRLEHRIIVSPSVTNIRSGLHKNQRWSDVQPCDLLYLTSEMMIMSESRRVMKKKRNSNDSCWNGRGEINSRSVSEITGFSRFQSNNTTKQ 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01040 425 PANTHER RING-H2 FINGER PROTEIN ATL43 40 423 - -
Tsu07g01040 425 MobiDBLite consensus disorder prediction 218 238 - -
Tsu07g01040 425 CDD RING-H2_EL5_like 160 203 - -
Tsu07g01040 425 Pfam Ring finger domain 160 203 IPR001841 -
Tsu07g01040 425 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Tsu07g01040 425 SMART ring_2 161 202 IPR001841 -
Tsu07g01040 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 210 IPR013083 -
Tsu07g01040 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 40 423 - -
Tsu07g01040 425 SUPERFAMILY RING/U-box 142 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01040 Tsu-Chr7 8695406 8696939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01040 66 416 C3H Transcription Factor Family AT5G05810 46.866 5.27e-77 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01040 K19041 - egr:104437323 285.804